[Home] | [Total List]

[175703_s_at]

Description g3342256 /REP_DB=GenBank Identifier /GB=AF047881.1 /PROTEIN_GB=AAC27552.1 /CHR=2 /FEA=Mapped Transcript /DEF=truncated CLR-1
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 30      6grp_total > 27      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 784
(3)
P 		539.7
(-3)
P 		619.6
(-1)
P 		585.1
(-1.9)
P 		244
B 667.7
(3)
P 		451.1
(-1.9)
P 		403.9
(-3)
P 		574.3
(0.9)
P 		264
C 790.2
(3)
P 		558.5
(-2.2)
P 		523.4
(-3)
P 		594
(-1.4)
P 		267
avr 747.3
(3) 		516.4
(-3) 		515.6
(-3) 		584.5
(-1.2) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 946
1 2 3 4 5 6 range
A 1390
(3)
P 		991.6
(0.3)
P 		610.3
(-2.3)
P 		513.7
(-3)
P 		850.9
(-0.7)
P 		839.4
(-0.8)
P 		876
B 1459.7
(3)
P 		1152.1
(1)
P 		716.1
(-1.8)
P 		773.8
(-1.4)
P 		522.1
(-3)
P 		935.7
(-0.4)
P 		938
C 1330.8
(3)
P 		875.5
(-0.9)
P 		709.6
(-2.4)
P 		656.5
(-2.8)
P 		635.8
(-3)
P 		885.5
(-0.8)
P 		695
avr 1393.5
(3) 		1006.4
(-0.1) 		678.7
(-2.8) 		648
(-3) 		669.6
(-2.8) 		886.9
(-1.1) 		746
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 285.5
(3)
P 		117.1
(-2.1)
P 		162
(-0.7)
P 		85.6
(-3)
P 		200
B 212.9
(3)
P 		111.4
(-2.1)
P 		93.6
(-3)
P 		122.4
(-1.6)
P 		119
C 261.6
(3)
P 		160.6
(-0.8)
P 		182.4
(0.1)
P 		100.2
(-3)
P 		161
avr 253.3
(3) 		129.7
(-1.9) 		146
(-1.3) 		102.7
(-3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 256.2
(0.4)
P 		352.7
(3)
P 		132.9
(-2.9)
P 		130.3
(-3)
P 		256.8
(0.4)
P 		204.4
(-1)
P 		222
B 507.9
(3)
P 		383.5
(0.8)
P 		173.9
(-3)
P 		205
(-2.4)
P 		212.1
(-2.3)
P 		348.9
(0.1)
P 		334
C 493.3
(3)
P 		267.1
(-0.8)
P 		180.6
(-2.2)
P 		132
(-3)
P 		205.7
(-1.8)
P 		296.4
(-0.3)
P 		361
avr 419.1
(3) 		334.4
(1.1) 		162.5
(-2.8) 		155.8
(-3) 		224.9
(-1.4) 		283.2
(-0.1) 		263
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175703_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19739
Sequence Type Exemplar sequence
Representative Public ID 3342256 NCBI
Target Description g3342256 /REP_DB=GenBank Identifier /GB=AF047881.1 /PROTEIN_GB=AAC27552.1 /CHR=2 /FEA=Mapped Transcript /DEF=truncated CLR-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027037(11), NM_001027039(11), NM_001027038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027037 NCBI Caenorhabditis elegans CLeaR family member (clr-1) (clr-1) mRNA, complete cds. 11/11 None
NM_001027039 NCBI Caenorhabditis elegans CLeaR family member (clr-1) (clr-1) mRNA, complete cds. 11/11 None
NM_001027038 NCBI Caenorhabditis elegans CLeaR family member (clr-1) (clr-1) mRNA, complete cds. 11/11 None
F56D1.4c ENSEMBL cdna:known chromosome:CEL140:II:5466335:5473770:1 gene:F56D1.4 11/11 A 
F56D1.4a ENSEMBL cdna:known chromosome:CEL140:II:5466335:5473770:1 gene:F56D1.4 11/11 A 
F56D1.4b ENSEMBL cdna:known chromosome:CEL140:II:5466444:5473760:1 gene:F56D1.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013103 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5466332-5473768(+) 100.0 100.0
Public Domain and Genome References
Ensembl F56D1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN60515 Clear protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022208.1| CLeaR family member (clr-1) [Caenorhabditis elegans] 0.0
blast AAC27551 CLR-1 [Caenorhabditis elegans] 0.0
blast AAN60516 Clear protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022209.1| CLeaR family member (clr-1) [Caenorhabditis elegans] 0.0
blast AAN60517 Clear protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022210.1| CLeaR family member (clr-1) [Caenorhabditis elegans] 0.0
blast AAC27552 truncated CLR-1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.6E-109
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.8E-81
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.8E-51
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.6E-109
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.8E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022210.1 1 719-738
F56D1.4c 1 719-738
Sequence
Target Sequence 
>C. ELEGANS:175703_S_AT
tatttttccatttatctctctagtcacataatatagttgttgccttccccgttttagctg
ttttctgggcacaaaaaattcaacaagcatacaaaaaacgggtcaatgttgtgctctctt
ccatatttccctctcattacaaagttttactcagttatgttttttttcgtttgtttcctc
atgaattctatttattacccaatctctaatactagtcaatagtctattctacactccccg
cctcaaccaacaccaccgacacacagaaacgagtatgcaactttcggatccttctcaatg
acttcagatgatttttttttcagatatttgctcgaaagccatattgttgcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTTCCATTTATCTCTCTAGTC 157 663 4354 Antisense
CATAATATAGTTGTTGCCTTCCCCG 655 213 4380 Antisense
CCGTTTTAGCTGTTTTCTGGGCACA 486 263 4402 Antisense
AACGGGTCAATGTTGTGCTCTCTTC 123 145 4450 Antisense
ATATTTCCCTCTCATTACAAAGTTT 140 19 4476 Antisense
TTTTTTCGTTTGTTTCCTCATGAAT 645 675 4515 Antisense
GAATTCTATTTATTACCCAATCTCT 45 325 4536 Antisense
AACACCACCGACACACAGAAACGAG 642 135 4602 Antisense
GAGTATGCAACTTTCGGATCCTTCT 62 399 4624 Antisense
GGATCCTTCTCAATGACTTCAGATG 601 511 4639 Antisense
TGCTCGAAAGCCATATTGTTGCCTT 449 581 4682 Antisense
Sequence Source GenBank