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[175701_at] homeobox protein (NK-2 subfamily)

Description g497683 /REP_DB=GenBank Identifier /GB=U10080.1 /PROTEIN_GB=AAA20840.1 /CHR=5 /FEA=Mapped Transcript /DEF=CEH-22 homeoprotein
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 80      6grp_total > 15      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 410.2
(3)
P 		183.4
(-2)
P 		195.9
(-1.7)
P 		138.1
(-3)
P 		272
B 414.9
(3)
P 		221.2
(-2.3)
P 		195.5
(-3)
P 		243.6
(-1.7)
P 		219
C 502.5
(3)
P 		234.3
(-2.1)
P 		192.3
(-2.9)
P 		188
(-3)
P 		315
avr 442.5
(3) 		213
(-2.5) 		194.6
(-2.9) 		189.9
(-3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 291.3
(2.3)
P 		312.1
(3)
P 		233.9
(0.3)
P 		198.9
(-0.8)
P 		193.6
(-1)
P 		135.1
(-3)
P 		177
B 317.6
(3)
P 		275.6
(1.6)
P 		172.4
(-1.9)
P 		189.5
(-1.4)
P 		141.1
(-3)
P 		148.4
(-2.8)
P 		177
C 324.4
(3)
P 		287.8
(1.7)
P 		169.4
(-2.7)
P 		185.1
(-2.1)
P 		161.4
(-3)
P 		197.2
(-1.7)
P 		163
avr 311.1
(3) 		291.8
(2.2) 		191.9
(-1.7) 		191.2
(-1.8) 		165.4
(-2.8) 		160.2
(-3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 149.4
(3)
P 		39.8
(-2.1)
P 		51.2
(-1.6)
P 		20.2
(-3)
P 		129
B 132.3
(3)
P 		54.6
(-2.4)
P 		45.3
(-3)
P 		51.9
(-2.5)
P 		87
C 166.4
(3)
P 		67.4
(-1.4)
P 		67
(-1.4)
P 		31.7
(-3)
P 		135
avr 149.4
(3) 		53.9
(-2) 		54.5
(-2) 		34.6
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 53.7
(-1.4)
P 		111
(3)
P 		50.9
(-1.6)
P 		50.4
(-1.7)
P 		58.4
(-1)
P 		32.9
(-3)
P 		78
B 110.5
(3)
P 		91.7
(1.4)
P 		41.9
(-3)
P 		50.2
(-2.3)
P 		57.3
(-1.7)
P 		55.4
(-1.8)
P 		69
C 120.2
(3)
P 		87.8
(0.7)
P 		43.1
(-2.6)
P 		37.2
(-3)
P 		52.2
(-1.9)
P 		66
(-0.9)
P 		83
avr 94.8
(2.8) 		96.8
(3) 		45.3
(-3) 		45.9
(-2.9) 		56
(-1.8) 		51.4
(-2.3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19932
Sequence Type Exemplar sequence
Representative Public ID 497683 NCBI
Target Description g497683 /REP_DB=GenBank Identifier /GB=U10080.1 /PROTEIN_GB=AAA20840.1 /CHR=5 /FEA=Mapped Transcript /DEF=CEH-22 homeoprotein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073331 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-22) (ceh-22) mRNA, complete cds. 11/11 A 
F29F11.5 ENSEMBL cdna:known chromosome:CEL140:V:10675043:10678228:1 gene:F29F11.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10675042-10678228(+) 100.0 100.0
Public Domain and Genome References
Gene Title homeobox protein (NK-2 subfamily)
Gene Symbol ceh-22
Ensembl F29F11.5
Entrez Gene 179485 Entrez gene
SwissProt P41936 EMBL-EBI
WormBase CE05771 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98272 Hypothetical protein F29F11.5 [Caenorhabditis elegans] ref|NP_505732.3| C.Elegans Homeobox family member (ceh-22) [Caenorhabditis elegans] 1.0E-148
blast P41936 Homeobox protein ceh-22 gb|AAA20841.1| CEH-22 homeoprotein gb|AAA20840.1| CEH-22 homeoprotein 1.0E-148
blast CAE64871 Hypothetical protein CBG09671 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.00000001954148E-24
Pfam IPR001356 EMBL-EBI Homeobox 6.3E-26
Sequence
Target Sequence 
>C. ELEGANS:175701_AT
tggccttcttgatttctctaatactctataccatgtcaatttttcccagaatacatctcg
tttctcacttttaattgctcatttctcattattacatattttctccgaattgtgatctac
aaatttataacaacaaatcagttcggactaccggtttttgaaatattttatcagttatgc
ccatacacatgttttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCTTCTTGATTTCTCTAATACT 84 545 1217 Antisense
CTTGATTTCTCTAATACTCTATACC 220 219 1224 Antisense
ACTCTATACCATGTCAATTTTTCCC 170 101 1239 Antisense
AATTTTTCCCAGAATACATCTCGTT 512 175 1254 Antisense
CCAGAATACATCTCGTTTCTCACTT 693 271 1262 Antisense
TCTCACTTTTAATTGCTCATTTCTC 600 613 1279 Antisense
TATTACATATTTTCTCCGAATTGTG 602 663 1306 Antisense
ATTTTCTCCGAATTGTGATCTACAA 99 15 1314 Antisense
CAACAAATCAGTTCGGACTACCGGT 519 189 1347 Antisense
TATTTTATCAGTTATGCCCATACAC 295 663 1380 Antisense
AGTTATGCCCATACACATGTTTTAT 508 63 1389 Antisense
Sequence Source GenBank