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[175698_at]

Description g3372863 /REP_DB=GenBank Identifier /GB=AF068201.1 /PROTEIN_GB=AAC70927.1 /CHR=4 /FEA=Mapped Transcript /DEF=aminopeptidase-1
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 82      6grp_total > 65      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 467
1 2 3 4 range
A 420.1
(-1.4)
P 		422.9
(-1.3)
P 		332.8
(-3)
P 		657.4
(3)
P 		325
B 384.5
(-1.9)
P 		337.7
(-3)
P 		358.7
(-2.5)
P 		584.7
(3)
P 		247
C 453.8
(-1.2)
P 		373.3
(-2.2)
P 		311.5
(-3)
P 		778.8
(3)
P 		467
avr 419.5
(-1.5) 		378
(-2.2) 		334.3
(-3) 		673.6
(3) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 344.5
(-0.2)
P 		272
(-3)
P 		426.9
(3)
P 		272.9
(-3)
P 		366.1
(0.6)
P 		381.9
(1.3)
P 		155
B 278.5
(-1.1)
P 		244.1
(-1.9)
P 		339.5
(0.5)
P 		391.6
(1.8)
P 		202.5
(-3)
P 		439.2
(3)
P 		237
C 210.3
(-3)
P 		301.7
(-0.7)
P 		332.6
(0.1)
P 		448.9
(3)
P 		237.9
(-2.3)
P 		337.2
(0.2)
P 		239
avr 277.8
(-2.5) 		272.6
(-2.8) 		366.3
(2) 		371.1
(2.2) 		268.8
(-3) 		386.1
(3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 153
(3)
P 		91.8
(-2.6)
P 		87
(-3)
P 		96.2
(-2.2)
P 		66
B 122.6
(2.7)
P 		83.4
(-3)
P 		83.1
(-3)
P 		124.6
(3)
P 		42
C 150.2
(3)
P 		107.3
(-3)
P 		108.6
(-2.8)
P 		131.3
(0.4)
P 		43
avr 141.9
(3) 		94.2
(-2.8) 		92.9
(-3) 		117.4
(0) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 63.5
(-3)
P 		96.7
(1.2)
P 		93
(0.8)
P 		69.2
(-2.3)
P 		110.5
(3)
P 		93
(0.8)
P 		47
B 96.9
(-1.9)
P 		81.2
(-3)
P 		82.4
(-2.9)
P 		103.7
(-1.4)
P 		82.3
(-2.9)
P 		163.8
(3)
P 		83
C 77.9
(-2.8)
P 		92.1
(-0.5)
P 		84.7
(-1.7)
P 		90.3
(-0.8)
P 		77
(-3)
P 		112.9
(3)
P 		36
avr 79.4
(-3) 		90
(-1.5) 		86.7
(-2) 		87.7
(-1.9) 		89.9
(-1.6) 		123.2
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175698_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19840
Sequence Type Exemplar sequence
Representative Public ID 3372863 NCBI
Target Description g3372863 /REP_DB=GenBank Identifier /GB=AF068201.1 /PROTEIN_GB=AAC70927.1 /CHR=4 /FEA=Mapped Transcript /DEF=aminopeptidase-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027885(11), NM_001027887(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027885 NCBI Caenorhabditis elegans C42C1.11a (peptidase) mRNA, complete cds. 11/11 None
NM_001027887 NCBI Caenorhabditis elegans C42C1.11c (peptidase) mRNA, complete cds. 11/11 None
C42C1.11a.2 ENSEMBL cdna:known chromosome:CEL140:IV:12279629:12281884:1 gene:C42C1.11 11/11 None
C42C1.11c.1 ENSEMBL cdna:known chromosome:CEL140:IV:12279631:12281888:1 gene:C42C1.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
C42C1.11c.2 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178176 3 2 NM_001027885 175698_at (11), 188673_s_at (11)
NM_001027887 175698_at (11), 188673_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12279634-12281890(+) 99.81 99.81
Public Domain and Genome References
Ensembl C42C1.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023056 C42C1.11a [Caenorhabditis elegans] gb|AAB97552.2| Hypothetical protein C42C1.11a [Caenorhabditis elegans] gb|AAC72891.1| aminopeptidase-1 [Caenorhabditis elegans] gb|AAC70927.1| aminopeptidase-1 [Caenorhabditis elegans] 0.0
blast NP_001023058 C42C1.11c [Caenorhabditis elegans] gb|AAO61434.1| Hypothetical protein C42C1.11c [Caenorhabditis elegans] 0.0
blast CAE62217 Hypothetical protein CBG06268 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175698_AT
gacaattctatcgcatgtacatcgcataatttttcatcgtttattatttttatttatcaa
tcgattatcgaactgtaaaagtaaagatcctatcaagtgtacccggctcatttctcttcc
cgaatcttccgtaaatcatagtctgaccagtcgtacttgcatttgtacggcatgaatcgt
tctggtacacctttcagacgtagtaatcgcatctctttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATTCTATCGCATGTACATCGC 169 365 1851 Antisense
GTACATCGCATAATTTTTCATCGTT 270 461 1867 Antisense
AAGATCCTATCAAGTGTACCCGGCT 424 155 1934 Antisense
TATCAAGTGTACCCGGCTCATTTCT 62 661 1941 Antisense
TCTTCCCGAATCTTCCGTAAATCAT 162 617 1965 Antisense
AATCTTCCGTAAATCATAGTCTGAC 37 171 1973 Antisense
TAGTCTGACCAGTCGTACTTGCATT 187 653 1989 Antisense
ACTTGCATTTGTACGGCATGAATCG 432 103 2005 Antisense
GGCATGAATCGTTCTGGTACACCTT 59 537 2019 Antisense
CTGGTACACCTTTCAGACGTAGTAA 265 241 2032 Antisense
AGACGTAGTAATCGCATCTCTTTCC 184 71 2046 Antisense
Sequence Source GenBank