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[175697_at]

Description g4165308 /REP_DB=GenBank Identifier /GB=AB017201.1 /PROTEIN_GB=BAA37144.1 /CHR=3 /FEA=Mapped Transcript /DEF=copper chaperone
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 55      6grp_total > 63      4grp_total > 48      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1351
1 2 3 4 range
A 803.7
(-3)
P 		1522.7
(3)
P 		1502.2
(2.8)
P 		945.6
(-1.8)
P 		719
B 1040.3
(-3)
P 		1608.9
(0.1)
P 		2154.4
(3)
P 		1219.4
(-2)
P 		1114
C 1092
(-3)
P 		1656.1
(1)
P 		1941.2
(3)
P 		1143.6
(-2.6)
P 		849
avr 978.7
(-3) 		1595.9
(1.2) 		1865.9
(3) 		1102.9
(-2.2) 		887

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1626
1 2 3 4 5 6 range
A 1372.4
(-1.7)
P 		1285.4
(-2)
P 		2525.3
(3)
P 		1432.5
(-1.4)
P 		1513.6
(-1.1)
P 		1038.2
(-3)
P 		1487
B 1351.7
(-3)
P 		1962.4
(-0.2)
P 		2664.3
(3)
P 		1965.2
(-0.2)
P 		1864.9
(-0.7)
P 		1638.2
(-1.7)
P 		1313
C 1310.5
(-2.1)
P 		1752.2
(0.8)
P 		1175.7
(-3)
P 		2085.7
(3)
P 		1478.8
(-1)
P 		1937.3
(2)
P 		910
avr 1344.9
(-3) 		1666.7
(-0.5) 		2121.8
(3) 		1827.8
(0.7) 		1619.1
(-0.9) 		1537.9
(-1.5) 		777
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 538
1 2 3 4 range
A 292.6
(0.6)
P 		330.5
(1.5)
P 		392.7
(3)
P 		138.4
(-3)
P 		254
B 331.7
(-1.2)
P 		397.4
(0.4)
P 		499.2
(3)
P 		259.9
(-3)
P 		239
C 361.5
(-0.9)
P 		476.1
(0.5)
P 		676.6
(3)
P 		192.8
(-3)
P 		484
avr 328.6
(-0.6) 		401.3
(0.8) 		522.8
(3) 		197
(-3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 505
1 2 3 4 5 6 range
A 253
(-3)
P 		457.1
(1.1)
P 		550
(3)
P 		363.3
(-0.8)
P 		456.7
(1.1)
P 		252.8
(-3)
P 		297
B 470.3
(-3)
P 		653.2
(0.8)
P 		647
(0.7)
P 		520.5
(-2)
P 		757.7
(3)
P 		610.9
(-0.1)
P 		287
C 485.7
(0.2)
P 		534.7
(1)
P 		299.2
(-3)
P 		419.4
(-0.9)
P 		478.5
(0.1)
P 		648.5
(3)
P 		349
avr 403
(-3) 		548.3
(2.4) 		498.7
(0.6) 		434.4
(-1.8) 		564.3
(3) 		504.1
(0.8) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175697_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19788
Sequence Type Exemplar sequence
Representative Public ID 4165308 NCBI
Target Description g4165308 /REP_DB=GenBank Identifier /GB=AB017201.1 /PROTEIN_GB=BAA37144.1 /CHR=3 /FEA=Mapped Transcript /DEF=copper chaperone
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066306(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066306 NCBI Caenorhabditis elegans CU (copper) Chaperonin family member (cuc-1) (cuc-1) mRNA, complete cds. 11/11 None
ZK652.11.2 ENSEMBL cdna:known chromosome:CEL140:III:7860382:7860904:-1 gene:ZK652.11 10/11 None
ZK652.11.1 ENSEMBL cdna:known chromosome:CEL140:III:7860384:7860920:-1 gene:ZK652.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029630 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029633 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7860379-7860904(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cuc-1
Ensembl ZK652.11
Entrez Gene 176102 Entrez gene
SwissProt Q9TYA3 EMBL-EBI
WormBase CE29163 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
6825 copper ion transport inferred from direct assay QuickGO AmiGO
30001 metal ion transport inferred from direct assay QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5829 cytosol inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
16530 metallochaperone activity inferred from direct assay QuickGO AmiGO
16531 copper chaperone activity inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL00882 Cu (copper) chaperonin protein 1 [Caenorhabditis elegans] ref|NP_498707.1| CU (copper) Chaperonin family member (cuc-1) [Caenorhabditis elegans] dbj|BAA37144.1| copper chaperone [Caenorhabditis elegans] 3.0E-32
blast CAE66873 Hypothetical protein CBG12251 [Caenorhabditis briggsae] 2.0E-29
blast EAL31037 GA16911-PA [Drosophila pseudoobscura] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR006121 EMBL-EBI Heavy metal transport/detoxification protein 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:175697_AT
aggcaagcagaagcagagtttccagatttctgactcaacaaatatcatgacacagtacgt
tttcgaaatgggcatgacatgcaatggctgtgcaaatgctgcgcgaaaagttctaggaaa
gcttggagaagacaaaatcaaaattgacgatattaacgtggaaaccaagaaaatcacagt
tacaactgatttaccagcatctgatgtacttgaagctctgaagaaaacaggaaaagagat
caagcaactacaataaatgacccttttgattgtctctttaatttctatccgaatggttgt
gaatatcgttattttttgacatttctgtaatttttgtattaatttatgactcttgcttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGCAAGCAGAAGCAGAGTTTCCAG 78 55 13 Antisense
GAGTTTCCAGATTTCTGACTCAACA 434 399 28 Antisense
ATATCATGACACAGTACGTTTTCGA 260 11 54 Antisense
GTACGTTTTCGAAATGGGCATGACA 159 459 67 Antisense
GGGCATGACATGCAATGGCTGTGCA 149 493 82 Antisense
ATGGCTGTGCAAATGCTGCGCGAAA 473 53 96 Antisense
ACAACTGATTTACCAGCATCTGATG 454 113 194 Antisense
GCATCTGATGTACTTGAAGCTCTGA 453 309 209 Antisense
AAATGACCCTTTTGATTGTCTCTTT 186 119 267 Antisense
TTGTCTCTTTAATTTCTATCCGAAT 550 703 282 Antisense
GTATTAATTTATGACTCTTGCTTGT 401 451 348 Antisense
Sequence Source GenBank