[Home] | [Total List]

[175696_s_at]

Description g845690 /REP_DB=GenBank Identifier /GB=U20555.1 /PROTEIN_GB=AAC46918.1 /CHR=3 /FEA=Mapped Transcript /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 03      6grp_total > 27      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 04      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2291
1 2 3 4 range
A 5802.3
(3)
P 		4630.6
(-1.4)
P 		4189.1
(-3)
P 		4822
(-0.6)
P 		1613
B 5806.9
(3)
P 		4921.5
(0.7)
P 		3516.4
(-3)
P 		4763.9
(0.3)
P 		2291
C 5400.1
(3)
P 		4286.4
(-0.7)
P 		3593.8
(-3)
P 		4585.7
(0.3)
P 		1806
avr 5669.8
(3) 		4612.8
(-0.3) 		3766.4
(-3) 		4723.9
(0) 		1903

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4289
1 2 3 4 5 6 range
A 6290.9
(3)
P 		4450.3
(0.4)
P 		2001.5
(-3)
P 		3536.4
(-0.9)
P 		3584.5
(-0.8)
P 		3445.8
(-1)
P 		4289
B 4114.9
(3)
P 		4009.6
(2.6)
P 		2412
(-3)
P 		2739.2
(-1.8)
P 		2859.2
(-1.4)
P 		3370.5
(0.4)
P 		1703
C 5268.9
(3)
P 		3815.7
(-0.3)
P 		3414.7
(-1.3)
P 		2659
(-3)
P 		3127.5
(-1.9)
P 		3745.6
(-0.5)
P 		2610
avr 5224.9
(3) 		4091.9
(0.4) 		2609.4
(-3) 		2978.2
(-2.2) 		3190.4
(-1.7) 		3520.6
(-0.9) 		2616
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1407
1 2 3 4 range
A 2112.6
(3)
P 		1005.2
(-1.7)
P 		1095.1
(-1.3)
P 		705.8
(-3)
P 		1407
B 1851.8
(3)
P 		1215.5
(-0.7)
P 		814.8
(-3)
P 		1015.2
(-1.8)
P 		1037
C 1787.6
(3)
P 		1232.4
(-0.3)
P 		1252.5
(-0.2)
P 		773.2
(-3)
P 		1014
avr 1917.3
(3) 		1151
(-1.2) 		1054.1
(-1.8) 		831.4
(-3) 		1086

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1517
1 2 3 4 5 6 range
A 1159.7
(0.8)
P 		1582.7
(3)
P 		435.9
(-3)
P 		896.9
(-0.6)
P 		1081.6
(0.4)
P 		838.9
(-0.9)
P 		1147
B 1431.8
(3)
P 		1334.6
(2.3)
P 		585.7
(-3)
P 		725.5
(-2)
P 		1161.7
(1.1)
P 		1256.8
(1.8)
P 		846
C 1953
(3)
P 		1164.3
(-0.3)
P 		869.1
(-1.6)
P 		534.7
(-3)
P 		1012
(-1)
P 		1253.9
(0)
P 		1418
avr 1514.8
(3) 		1360.5
(2) 		630.2
(-3) 		719
(-2.4) 		1085.1
(0.1) 		1116.5
(0.3) 		885
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175696_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19785
Sequence Type Exemplar sequence
Representative Public ID 845690 NCBI
Target Description g845690 /REP_DB=GenBank Identifier /GB=U20555.1 /PROTEIN_GB=AAC46918.1 /CHR=3 /FEA=Mapped Transcript /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027440, NM_066542, NM_001027439
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F54F2.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:8798298:8806176:1 gene:F54F2.2 11/11 A 
F54F2.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:8798300:8806174:1 gene:F54F2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8793929-8806176(+) 99.45 100.0
Public Domain and Genome References
Ensembl F54F2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK26137 Zinc finger protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_498943.2| Zinc Finger Protein family member (zfp-1) [Caenorhabditis elegans] sp|P34447|YM2A_CAEEL Hypothetical protein F54F2.2 in chromosome III, isoform a 0.0
blast AAC46918 zinc finger protein prf||2122400A CEZF gene 0.0
blast AAO91714 Zinc finger protein protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022611.1| Zinc Finger Protein family member (zfp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.5E-17
Sequence
Target Sequence 
>C. ELEGANS:175696_S_AT
tcttaaatacttgcaccgcctatagtgtgtttttatgtgtgaaccaattcctgtcaatta
cttatcctactatcatcaccacctccgtaaaattgtgcctctcttacttatttttttacc
cactcatacaacttccacaatcccccatccaccccctcagtctcacgatttgcattcgat
atttattgaattacctattgttcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTAAATACTTGCACCGCCTATAG 406 611 3179 Antisense
AATACTTGCACCGCCTATAGTGTGT 11 171 3184 Antisense
ACTTGCACCGCCTATAGTGTGTTTT 624 103 3187 Antisense
GCACCGCCTATAGTGTGTTTTTATG 224 315 3191 Antisense
GCCTATAGTGTGTTTTTATGTGTGA 119 283 3196 Antisense
TATGTGTGAACCAATTCCTGTCAAT 69 655 3212 Antisense
ATCATCACCACCTCCGTAAAATTGT 162 31 3250 Antisense
CATCACCACCTCCGTAAAATTGTGC 19 213 3252 Antisense
CCCTCAGTCTCACGATTTGCATTCG 28 261 3332 Antisense
GTCTCACGATTTGCATTCGATATTT 626 469 3338 Antisense
TTATTGAATTACCTATTGTTCTTAT 286 675 3361 Antisense
Sequence Source GenBank