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[175695_at]

Description g845690 /REP_DB=GenBank Identifier /GB=U20555.1 /PROTEIN_GB=AAC46918.1 /CHR=3 /FEA=Mapped Transcript /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_highest_8_8 > 61      4grp_high_8_8 > 26      6grp_highest_nonorm > 0      6grp_total > 18      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1269
1 2 3 4 range
A 2494
(3)
P 		1562
(-1.4)
P 		1225
(-3)
P 		2014.5
(0.7)
P 		1269
B 2342.5
(3)
P 		1772.9
(-0.1)
P 		1233.8
(-3)
P 		1662.3
(-0.7)
P 		1109
C 2481.8
(3)
P 		1874.8
(-0.4)
P 		1404
(-3)
P 		2097.4
(0.9)
P 		1078
avr 2439.4
(3) 		1736.6
(-0.7) 		1287.6
(-3) 		1924.7
(0.3) 		1152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1869
1 2 3 4 5 6 range
A 2755.8
(3)
P 		1785.5
(-0.5)
P 		1104.8
(-3)
P 		1222.3
(-2.6)
P 		1433.6
(-1.8)
P 		1406.9
(-1.9)
P 		1651
B 2547.2
(3)
P 		1632.5
(-0.3)
P 		887.1
(-3)
P 		1425.2
(-1.1)
P 		961.7
(-2.7)
P 		1491.5
(-0.8)
P 		1660
C 2277.9
(3)
P 		1120.2
(-2.3)
P 		1384.5
(-1.1)
P 		1130.4
(-2.3)
P 		1382.8
(-1.1)
P 		972.3
(-3)
P 		1306
avr 2527
(3) 		1512.7
(-1.3) 		1125.5
(-3) 		1259.3
(-2.4) 		1259.4
(-2.4) 		1290.2
(-2.3) 		1402
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 622
1 2 3 4 range
A 908.1
(3)
P 		339.1
(-2.6)
P 		320.2
(-2.8)
P 		294.9
(-3)
P 		613
B 747
(3)
P 		437.9
(-1)
P 		285.9
(-3)
P 		354.2
(-2.1)
P 		461
C 821.5
(3)
P 		539
(-0.6)
P 		489.3
(-1.3)
P 		353.7
(-3)
P 		468
avr 825.5
(3) 		438.7
(-1.7) 		365.1
(-2.6) 		334.3
(-3) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 508
(1.1)
P 		635
(3)
P 		240.6
(-3)
P 		310
(-1.9)
P 		432.6
(-0.1)
P 		342.5
(-1.4)
P 		394
B 886.3
(3)
P 		543.4
(-0.1)
P 		215.4
(-3)
P 		377.5
(-1.6)
P 		390.7
(-1.4)
P 		556.2
(0)
P 		671
C 844.3
(3)
P 		341.8
(-1.9)
P 		352.4
(-1.8)
P 		227.3
(-3)
P 		447.4
(-0.9)
P 		325.5
(-2)
P 		617
avr 746.2
(3) 		506.7
(-0) 		269.5
(-3) 		304.9
(-2.6) 		423.6
(-1.1) 		408.1
(-1.3) 		477
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19785
Sequence Type Exemplar sequence
Representative Public ID 845690 NCBI
Target Description g845690 /REP_DB=GenBank Identifier /GB=U20555.1 /PROTEIN_GB=AAC46918.1 /CHR=3 /FEA=Mapped Transcript /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027440, NM_066542, NM_001027439
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F54F2.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:8798298:8806176:1 gene:F54F2.2 11/11 A 
F54F2.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:8798300:8806174:1 gene:F54F2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8793929-8806176(+) 99.45 100.0
Public Domain and Genome References
Ensembl F54F2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK26137 Zinc finger protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_498943.2| Zinc Finger Protein family member (zfp-1) [Caenorhabditis elegans] sp|P34447|YM2A_CAEEL Hypothetical protein F54F2.2 in chromosome III, isoform a 0.0
blast AAC46918 zinc finger protein prf||2122400A CEZF gene 0.0
blast AAO91714 Zinc finger protein protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022611.1| Zinc Finger Protein family member (zfp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 1.5E-17
Sequence
Target Sequence 
>C. ELEGANS:175695_AT
ccctctcctcattcactaaaaaataagaaattttggttttccttatctctcaactctcat
cccggtttttgatcgattgatttcgcttgcatcgtggattttttgctgtattttgaaaac
atttttttctataaaaatccaataactacctttttgtctcaaatccacatatatgtcaaa
aactttgaattttgcgggtcatattatttctctattttgaagcgcatttgctcttctcgg
cgtcacttttctccatctcatccttccccaattctcactcttaaatacttgcaccgccta
tagtgtgtttttatgtgtgaaccaattcctgtcaattacttatcctactatcatcaccac
ctccgtaaaattgtgcctctcttacttatttttttacccactcatacaacttccacaatc
ccccatccaccccctcagtctcacgatttgcattcgatatttattgaattacctattgtt
cttattgttggttatattcatttgtcactgtgcttatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCTCCTCATTCACTAAAAAATA 612 259 2901 Antisense
CTCTCATCCCGGTTTTTGATCGATT 320 231 2954 Antisense
TTGATCGATTGATTTCGCTTGCATC 210 707 2969 Antisense
GCTTGCATCGTGGATTTTTTGCTGT 385 307 2985 Antisense
ATCCAATAACTACCTTTTTGTCTCA 549 39 3037 Antisense
TTGTCTCAAATCCACATATATGTCA 245 705 3054 Antisense
TTGCGGGTCATATTATTTCTCTATT 100 703 3092 Antisense
TTTGAAGCGCATTTGCTCTTCTCGG 416 667 3116 Antisense
TTCCCCAATTCTCACTCTTAAATAC 446 695 3164 Antisense
TAAAATTGTGCCTCTCTTACTTATT 54 641 3266 Antisense
ATTCATTTGTCACTGTGCTTATTTG 684 11 3396 Antisense
Sequence Source GenBank