[Home] | [Total List]

[175694_s_at]

Description g156471 /REP_DB=GenBank Identifier /GB=M94130.1 /PROTEIN_GB=AAA91281.1 /CHR=3 /FEA=Mapped Transcript /DEF=transformer protein
Cluster 4grp_high_8_8 > 44      6grp_total > 52      4grp_total > 51      6grp_cgc > 82      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 93.1
(0.2)
P 		122.1
(3)
P 		94.6
(0.3)
P 		60.8
(-3)
M 		61
B 73.1
(-2.3)
P 		109.5
(3)
P 		104.8
(2.3)
P 		68.4
(-3)
P 		41
C 122.9
(2.4)
P 		128.9
(3)
P 		69.1
(-3)
P 		76.1
(-2.3)
P 		60
avr 96.4
(0.2) 		120.2
(3) 		89.5
(-0.6) 		68.4
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 43.5
(-2.7)
A 		279.8
(3)
P 		174.5
(0.4)
P 		170.2
(0.3)
P 		32.8
(-3)
P 		81.7
(-1.8)
M 		247
B 38.4
(-2.6)
P 		120.2
(0.8)
P 		173
(3)
P 		87
(-0.6)
P 		73.4
(-1.2)
P 		29.9
(-3)
A 		143
C 141.6
(-0.7)
P 		110.8
(-1.2)
P 		336.8
(3)
P 		70.8
(-2)
P 		87.8
(-1.7)
P 		16.7
(-3)
A 		320
avr 74.5
(-2) 		170.3
(1.1) 		228.1
(3) 		109.3
(-0.8) 		64.7
(-2.3) 		42.8
(-3) 		185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 33.9
(3)
P 		26.5
(1.2)
P 		24.7
(0.8)
P 		8.9
(-3)
M 		25
B 23.3
(1.2)
P 		27
(3)
P 		24.3
(1.7)
P 		14.6
(-3)
P 		12
C 40.7
(3)
P 		37.1
(2.2)
P 		24.1
(-0.6)
P 		12.8
(-3)
P 		28
avr 32.6
(3) 		30.2
(2.3) 		24.4
(0.6) 		12.1
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 8
(-3)
A 		99.5
(3)
P 		38
(-1)
P 		43.2
(-0.7)
P 		9.9
(-2.9)
P 		19.9
(-2.2)
M 		92
B 13.4
(-2.6)
P 		40
(2.6)
P 		42
(3)
P 		23.1
(-0.7)
P 		29.8
(0.6)
P 		11.1
(-3)
A 		31
C 52.5
(0.5)
P 		33.8
(-0.9)
P 		85.7
(3)
P 		14.2
(-2.4)
P 		28.4
(-1.3)
P 		5.6
(-3)
A 		80
avr 24.6
(-1.4) 		57.8
(3) 		55.2
(2.7) 		26.8
(-1.1) 		22.7
(-1.6) 		12.2
(-3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175694_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19782
Sequence Type Exemplar sequence
Representative Public ID 156471 NCBI
Target Description g156471 /REP_DB=GenBank Identifier /GB=M94130.1 /PROTEIN_GB=AAA91281.1 /CHR=3 /FEA=Mapped Transcript /DEF=transformer protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027709(11), NM_001027710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027709 NCBI Caenorhabditis elegans TRAnsformer : XX animals transformed into males family member (tra-1) (tra-1) mRNA, complete cds. 11/11 None
NM_001027710 NCBI Caenorhabditis elegans TRAnsformer : XX animals transformed into males family member (tra-1) (tra-1) mRNA, complete cds. 11/11 None
SNAP00000007206 ENSEMBL cdna:SNAP chromosome:CEL140:III:11171969:11184191:-1 11/11 None
Y47D3A.6a ENSEMBL cdna:known chromosome:CEL140:III:11171969:11194937:-1 gene:Y47D3A.6 11/11 A 
Y47D3A.6b ENSEMBL cdna:known chromosome:CEL140:III:11181903:11195077:-1 gene:Y47D3A.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007264 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11181898-11195080(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y47D3A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast P34708 Sex-determining transformer protein 1 gb|AAB59181.1| tra-1 0.0
blast CAB61040 Hypothetical protein Y47D3A.6a [Caenorhabditis elegans] ref|NP_001022880.1| TRAnsformer : XX animals transformed into males family member (tra-1) [Caenorhabditis elegans] 0.0
blast T31538 hypothetical protein Y47D3A.6 - Caenorhabditis elegans 0.0
blast AAA91281 transformer protein 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.2E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.4E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.5E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.2E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.4E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.5E-6
Sequence
Target Sequence 
>C. ELEGANS:175694_S_AT
caaacgaccacaaaacaacgctgccaacagttcgaacagtggaaatgattcggatatgat
gggagatcacgatttgacatgtcgttggaagtcgtgtaactctagtttccagactctcaa
ggcactagtggatcatgttcaagaaagtcacgtccaatcaactgaacaagaacatcacgc
atggcgttgtgagtgggaaggatgtgatcgaaatgagacgttcaaagcattgtacatgct
cattgtgcatgttcgacgtcatacaggcgagaagccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACGACCACAAAACAACGCTGCC 688 191 705 Antisense
CAACGCTGCCAACAGTTCGAACAGT 511 181 720 Antisense
GACATGTCGTTGGAAGTCGTGTAAC 601 369 780 Antisense
GTCGTGTAACTCTAGTTTCCAGACT 448 471 795 Antisense
AGTTTCCAGACTCTCAAGGCACTAG 427 63 808 Antisense
AAGGCACTAGTGGATCATGTTCAAG 458 161 823 Antisense
GAAAGTCACGTCCAATCAACTGAAC 325 361 847 Antisense
TGAACAAGAACATCACGCATGGCGT 432 571 867 Antisense
GCATGGCGTTGTGAGTGGGAAGGAT 442 309 883 Antisense
GCTCATTGTGCATGTTCGACGTCAT 611 299 942 Antisense
TCGACGTCATACAGGCGAGAAGCCC 665 597 957 Antisense
Sequence Source GenBank