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[175693_at]

Description g156471 /REP_DB=GenBank Identifier /GB=M94130.1 /PROTEIN_GB=AAA91281.1 /CHR=3 /FEA=Mapped Transcript /DEF=transformer protein
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 41      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 43      6grp_cgc > 72      6grp_high1_sub > 03      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 216
(-3)
P 		278.1
(3)
P 		243.2
(-0.4)
P 		231.5
(-1.5)
P 		62
B 216.7
(1.3)
P 		238.9
(3)
P 		161.6
(-3)
P 		198.3
(-0.2)
P 		77
C 243.4
(3)
P 		236.8
(0.7)
P 		239.5
(1.7)
P 		225.9
(-3)
P 		18
avr 225.4
(-1.3) 		251.3
(3) 		214.8
(-3) 		218.6
(-2.4) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 242
(-1.3)
P 		483.4
(3)
P 		446.9
(2.4)
P 		371.3
(1)
P 		215.4
(-1.8)
P 		145
(-3)
P 		338
B 225.6
(0.1)
P 		345.2
(3)
P 		281.1
(1.4)
P 		254.3
(0.8)
P 		147.9
(-1.8)
P 		99.9
(-3)
P 		245
C 306.5
(-0.4)
P 		305.2
(-0.4)
P 		610.6
(3)
P 		296.9
(-0.5)
P 		205.8
(-1.5)
P 		74.9
(-3)
P 		536
avr 258
(-0.3) 		377.9
(1.8) 		446.2
(3) 		307.5
(0.5) 		189.7
(-1.5) 		106.6
(-3) 		340
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 78.7
(3)
P 		60.4
(0.5)
P 		63.6
(1)
P 		33.9
(-3)
P 		45
B 69.1
(3)
P 		59
(1.1)
P 		37.4
(-3)
P 		42.3
(-2.1)
P 		32
C 80.6
(2.6)
P 		68.1
(1)
P 		83.5
(3)
P 		38.1
(-3)
P 		45
avr 76.1
(3) 		62.5
(0.9) 		61.5
(0.7) 		38.1
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 44.6
(-2.6)
P 		171.9
(3)
P 		97.3
(-0.3)
P 		94.2
(-0.4)
P 		65
(-1.7)
P 		35.3
(-3)
P 		137
B 78.5
(0.2)
P 		114.9
(3)
P 		68.3
(-0.6)
P 		67.4
(-0.7)
P 		60.1
(-1.2)
P 		37.3
(-3)
P 		78
C 113.6
(1.1)
P 		93.1
(0.1)
P 		155.4
(3)
P 		59.7
(-1.4)
P 		66.6
(-1.1)
P 		25.1
(-3)
P 		130
avr 78.9
(-0) 		126.6
(3) 		107
(1.7) 		73.8
(-0.4) 		63.9
(-1) 		32.6
(-3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19782
Sequence Type Exemplar sequence
Representative Public ID 156471 NCBI
Target Description g156471 /REP_DB=GenBank Identifier /GB=M94130.1 /PROTEIN_GB=AAA91281.1 /CHR=3 /FEA=Mapped Transcript /DEF=transformer protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027710(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027710 NCBI Caenorhabditis elegans TRAnsformer : XX animals transformed into males family member (tra-1) (tra-1) mRNA, complete cds. 11/11 None
Y47D3A.6b ENSEMBL cdna:known chromosome:CEL140:III:11181903:11195077:-1 gene:Y47D3A.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176548 2 1 NM_001027709 188843_s_at (11)
NM_001027710 175693_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11181898-11195080(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y47D3A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91281 transformer protein 1.0E-148
blast CAC42377 Hypothetical protein Y47D3A.6b [Caenorhabditis elegans] ref|NP_001022881.1| TRAnsformer : XX animals transformed into males family member (tra-1) [Caenorhabditis elegans] 1.0E-148
blast P34708 Sex-determining transformer protein 1 gb|AAB59181.1| tra-1 1.0E-142
Sequence
Target Sequence 
>C. ELEGANS:175693_AT
gtgtgaggttggttttggtggtgataatgagatttgagatgatataatgcccacttttcc
ttatggttttgatggaaattatggtctcggaaaagtgtctcggaaattttgaaaaaaaat
tttttttttctgaaaattcggaacgactttttttttaaacaacattttcgagcaattttc
tgagcactttctctcaaaattcacatttttctacctcttagcttttccctttttttttgt
tttacctcgtttgtgtgtttttcgtgaacattgtgaacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGAGGTTGGTTTTGGTGGTGAT 701 487 987 Antisense
GATGATATAATGCCCACTTTTCCTT 203 411 1024 Antisense
TGCCCACTTTTCCTTATGGTTTTGA 253 475 1034 Antisense
TTTGATGGAAATTATGGTCTCGGAA 277 665 1054 Antisense
TATGGTCTCGGAAAAGTGTCTCGGA 62 655 1066 Antisense
TTCGAGCAATTTTCTGAGCACTTTC 182 695 1153 Antisense
TTCTGAGCACTTTCTCTCAAAATTC 233 695 1164 Antisense
AATTCACATTTTTCTACCTCTTAGC 43 177 1184 Antisense
CACATTTTTCTACCTCTTAGCTTTT 442 195 1188 Antisense
TTACCTCGTTTGTGTGTTTTTCGTG 293 679 1228 Antisense
GTTTTTCGTGAACATTGTGAACAAA 103 443 1243 Antisense
Sequence Source GenBank