[Home] | [Total List]

[175689_s_at] importin alpha, nuclear transport factor

Description g2795932 /REP_DB=GenBank Identifier /GB=AF040997.1 /PROTEIN_GB=AAB97173.1 /CHR=5 /FEA=Mapped Transcript /DEF=importin alpha 3
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 37      4grp_high_8_8 > 02      6grp_highest_nonorm > 98      6grp_total > 87      4grp_total > 14      6grp_highest_sub > In      6grp_cgc > 59      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 376
1 2 3 4 range
A 565.8
(3)
P 		386.3
(-3)
P 		426.4
(-1.7)
P 		539.5
(2.1)
P 		180
B 670.9
(1.5)
P 		410.4
(-3)
P 		448.5
(-2.3)
P 		757.7
(3)
P 		347
C 647.6
(0.9)
P 		441.1
(-3)
P 		503
(-1.8)
P 		762.6
(3)
P 		322
avr 628.1
(1.7) 		412.6
(-3) 		459.3
(-2) 		686.6
(3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1640
1 2 3 4 5 6 range
A 542.1
(-2.1)
P 		368.6
(-3)
P 		701.7
(-1.4)
P 		621.2
(-1.8)
P 		1127
(0.7)
P 		1592.2
(3)
P 		1224
B 605.1
(-2.7)
P 		566.9
(-2.9)
P 		546.9
(-3)
P 		640.9
(-2.5)
P 		1105.1
(-0.1)
P 		1711.1
(3)
P 		1164
C 486.8
(-3)
P 		568.5
(-2.7)
P 		480.5
(-3)
P 		758.8
(-1.9)
P 		925.1
(-1.3)
P 		2008.3
(3)
P 		1528
avr 544.7
(-2.8) 		501.3
(-3) 		576.4
(-2.6) 		673.6
(-2.2) 		1052.4
(-0.4) 		1770.5
(3) 		1269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 206
(3)
P 		83.9
(-2.8)
P 		111.5
(-1.5)
P 		79
(-3)
P 		127
B 213.9
(3)
P 		101.4
(-3)
P 		103.9
(-2.9)
P 		161.5
(0.2)
P 		113
C 214.4
(3)
P 		126.8
(-3)
P 		175.3
(0.3)
P 		128.6
(-2.9)
P 		88
avr 211.4
(3) 		104
(-3) 		130.2
(-1.5) 		123
(-1.9) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 572
1 2 3 4 5 6 range
A 99.9
(-3)
P 		131.1
(-2.3)
P 		152.8
(-1.9)
P 		157.5
(-1.8)
P 		340.1
(2)
P 		387.6
(3)
P 		288
B 210.6
(-2.1)
P 		188.7
(-2.3)
P 		132.8
(-3)
P 		169.8
(-2.6)
P 		449
(0.8)
P 		638.1
(3)
P 		505
C 180.4
(-2.4)
P 		173.5
(-2.4)
P 		122.3
(-3)
P 		152.6
(-2.7)
P 		299.3
(-1.1)
P 		672.3
(3)
P 		550
avr 163.6
(-2.6) 		164.4
(-2.6) 		136
(-3) 		160
(-2.7) 		362.8
(0.2) 		566
(3) 		430
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175689_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19938
Sequence Type Exemplar sequence
Representative Public ID 2795932 NCBI
Target Description g2795932 /REP_DB=GenBank Identifier /GB=AF040997.1 /PROTEIN_GB=AAB97173.1 /CHR=5 /FEA=Mapped Transcript /DEF=importin alpha 3
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073453(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073453 NCBI Caenorhabditis elegans IMportin Alpha family member (ima-1) (ima-1) mRNA, complete cds. 11/11 A 
T19B10.7.2 ENSEMBL cdna:known chromosome:CEL140:V:11242263:11244356:1 gene:T19B10.7 11/11 None
T19B10.7.1 ENSEMBL cdna:known chromosome:CEL140:V:11242293:11244368:1 gene:T19B10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11242293-11244368(+) 100.0 100.0
Public Domain and Genome References
Gene Title importin alpha, nuclear transport factor
Gene Symbol ima-1
Ensembl T19B10.7
Entrez Gene 179555 Entrez gene
SwissProt Q22560 EMBL-EBI
WormBase CE06461 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6606 protein import into nucleus inferred from electronic annotation QuickGO AmiGO
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98540 Hypothetical protein T19B10.7 [Caenorhabditis elegans] ref|NP_505854.1| IMportin Alpha family member (ima-1) [Caenorhabditis elegans] sp|Q22560|IMA1_CAEEL Importin alpha-1 subunit (Karyopherin alpha-1 subunit) 0.0
blast AAB97173 importin alpha 1 [Caenorhabditis elegans] pir||T42404 importin alpha 3 - Caenorhabditis elegans 0.0
blast CAE75198 Hypothetical protein CBG23145 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002652 EMBL-EBI Importin alpha-like protein, beta-binding region 1.7E-31
Sequence
Target Sequence 
>C. ELEGANS:175689_S_AT
taaagaacattccttgctttcctccacaatttctttcttgtcgttgtcatgcgctaaaag
tgctaaatattttccggatatctcgcttcgattaaacttctatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAGAACATTCCTTGCTTTCCTCC 602 639 1765 Antisense
TTCCTCCACAATTTCTTTCTTGTCG 61 701 1783 Antisense
AATTTCTTTCTTGTCGTTGTCATGC 401 175 1792 Antisense
CTTTCTTGTCGTTGTCATGCGCTAA 214 223 1797 Antisense
TTGTCGTTGTCATGCGCTAAAAGTG 366 683 1802 Antisense
GTTGTCATGCGCTAAAAGTGCTAAA 515 437 1807 Antisense
AAGTGCTAAATATTTTCCGGATATC 55 159 1822 Antisense
AAATATTTTCCGGATATCTCGCTTC 124 117 1829 Antisense
TTTCCGGATATCTCGCTTCGATTAA 47 669 1835 Antisense
GGATATCTCGCTTCGATTAAACTTC 122 511 1840 Antisense
ATCTCGCTTCGATTAAACTTCTATG 507 31 1844 Antisense
Sequence Source GenBank