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[175687_at]

Description g289713 /REP_DB=GenBank Identifier /GB=L12348.1 /PROTEIN_GB=AAA28107.1 /CHR=X /FEA=Mapped Transcript /DEF=ATPase inhibitor
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 85      4grp_highest_8_8 > 05      4grp_high_8_8 > 29      6grp_highest_nonorm > 73      6grp_total > 76      4grp_total > 33      6grp_highest_sub > In      6grp_cgc > 57      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 432
1 2 3 4 range
A 476
(-3)
P 		682.4
(0.6)
P 		575.3
(-1.3)
P 		821.1
(3)
P 		345
B 572.1
(-3)
P 		826.6
(2.5)
P 		682.3
(-0.6)
P 		850.3
(3)
P 		278
C 558.4
(-3)
P 		907.6
(3)
P 		775
(0.7)
P 		845.1
(1.9)
P 		349
avr 535.5
(-3) 		805.5
(2.3) 		677.5
(-0.2) 		838.8
(3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 371
1 2 3 4 5 6 range
A 436
(-3)
P 		739.3
(1.9)
P 		561.7
(-1)
P 		547.9
(-1.2)
P 		659
(0.6)
P 		807.3
(3)
P 		371
B 468.7
(-3)
P 		512.3
(-1.8)
P 		553.4
(-0.7)
P 		669.1
(2.4)
P 		550.8
(-0.8)
P 		692.1
(3)
P 		223
C 526.3
(-1.6)
P 		446.6
(-3)
P 		693.3
(1.3)
P 		508.3
(-1.9)
P 		613
(-0.1)
P 		788.6
(3)
P 		342
avr 477
(-3) 		566.1
(-1.1) 		602.8
(-0.4) 		575.1
(-0.9) 		607.6
(-0.3) 		762.7
(3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 173.3
(3)
P 		148.1
(0.2)
P 		150.4
(0.4)
P 		120.2
(-3)
P 		53
B 182.4
(0.2)
P 		204.1
(3)
P 		158.1
(-3)
P 		181.2
(0)
P 		46
C 184.8
(-1)
P 		260.9
(2.6)
P 		270.1
(3)
P 		142.5
(-3)
P 		128
avr 180.2
(0.4) 		204.4
(3) 		192.9
(1.8) 		148
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 80.4
(-3)
P 		262.9
(3)
P 		122.3
(-1.6)
P 		139
(-1.1)
P 		198.9
(0.9)
P 		196.6
(0.8)
P 		183
B 163.1
(-1.6)
P 		170.5
(-1.2)
P 		134.4
(-3)
P 		177.2
(-0.9)
P 		223.8
(1.3)
P 		258.1
(3)
P 		124
C 195.1
(0.4)
P 		136.3
(-1.7)
P 		176.5
(-0.2)
P 		102.2
(-3)
P 		198.4
(0.6)
P 		264
(3)
P 		162
avr 146.2
(-2.6) 		189.9
(0) 		144.4
(-2.7) 		139.5
(-3) 		207
(1) 		239.6
(3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175687_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20038
Sequence Type Exemplar sequence
Representative Public ID 289713 NCBI
Target Description g289713 /REP_DB=GenBank Identifier /GB=L12348.1 /PROTEIN_GB=AAA28107.1 /CHR=X /FEA=Mapped Transcript /DEF=ATPase inhibitor
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076135 NCBI Caenorhabditis elegans Mitochondrial ATPase Inhibitor family member (mai-1) (mai-1) mRNA, complete cds. 11/11 None
K10B3.9.2 ENSEMBL cdna:known chromosome:CEL140:X:3113441:3116582:-1 gene:K10B3.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
K10B3.9.1 7/11 Cross Hyb Matching Probes A 
K10B3.9.3 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3114791-3116582(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mai-1
Ensembl K10B3.9
Entrez Gene 3565232 Entrez gene
SwissProt P37209 EMBL-EBI
WormBase CE07372 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45978 negative regulation of nucleoside metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5739 mitochondrion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4857 enzyme inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53875 Mitochondrial atpase inhibitor family protein 1 [Caenorhabditis elegans] ref|NP_508536.1| Mitochondrial ATPase Inhibitor family member (mai-1) [Caenorhabditis elegans] sp|P37209|ATIF1_CAEEL ATPase inhibitor, mitochondrial homolog gb|AAA28107.1| ATPase inhibitor 9.0E-20
blast CAE68382 Hypothetical protein CBG14138 [Caenorhabditis briggsae] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR007648 EMBL-EBI Mitochondrial ATPase inhibitor, IATP 7.3E-34
Sequence
Target Sequence 
>C. ELEGANS:175687_AT
ctaaaaaaacagcgaccctgccctgccttctaaggaaacaacacaacagagtttgacttc
aaggagctcaccggaaaccaatgttgctcttgctcacaaagacttttgaggaaatcaaaa
cagatgtcaggatctggaagtggaagtggtgctggacatggtggaggctccggcggctca
atccgtgaagcaggtggatcactcggcatgatgggcgccaccagagaagaagaatacttc
cgaagacaacaaaaagatcagttggacaatctcaagaagaagcttgaagcagatatgacg
caaagccaacaggaaattcgggatcatgaaaaggttctcgaacaacatcagcaacgactg
aaggaaatcgagaaaggacacggaacataaaaaatagagggcttttcaaacggctctctg
ttctttttgcatcatcattttcaattttccctttctttttatgcatacttattctctcct
ctctattttctctctcacaccgcatttcttcatcttgcctattgcatcatttttttttcg
cttactgcacatgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAAAAAAACAGCGACCCTGCCCTG 698 221 336 Antisense
CCTGCCCTGCCTTCTAAGGAAACAA 320 267 352 Antisense
TTTGACTTCAAGGAGCTCACCGGAA 371 667 387 Antisense
CCAATGTTGCTCTTGCTCACAAAGA 364 277 413 Antisense
AGAGGGCTTTTCAAACGGCTCTCTG 587 67 731 Antisense
TTCAAACGGCTCTCTGTTCTTTTTG 589 683 740 Antisense
CTCTGTTCTTTTTGCATCATCATTT 126 233 751 Antisense
TTTTCCCTTTCTTTTTATGCATACT 628 675 780 Antisense
ATTTCTTCATCTTGCCTATTGCATC 231 17 839 Antisense
GCCTATTGCATCATTTTTTTTTCGC 232 281 852 Antisense
TTTTTTTCGCTTACTGCACATGTTT 377 675 867 Antisense
Sequence Source GenBank