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[175685_s_at]

Description g4579711 /REP_DB=GenBank Identifier /GB=AB009567.1 /PROTEIN_GB=BAA75067.1 /CHR=4 /FEA=Mapped Transcript /DEF=Vha11 protein
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 12      6grp_total > 15      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3724
1 2 3 4 range
A 4191
(3)
P 		3068.3
(1)
P 		4219.3
(3)
P 		805.4
(-3)
P 		3414
B 3318.2
(1.5)
P 		4100.9
(3)
P 		3358.9
(1.5)
P 		1043.4
(-3)
P 		3058
C 4075.6
(2.3)
P 		4505.7
(3)
P 		4053.5
(2.3)
P 		781.8
(-3)
P 		3724
avr 3861.6
(2.9) 		3891.6
(3) 		3877.2
(3) 		876.9
(-3) 		3015

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4277
1 2 3 4 5 6 range
A 1837.5
(-1.3)
P 		3275.8
(3)
P 		1714.3
(-1.6)
P 		1888.1
(-1.1)
P 		1259.9
(-3)
P 		1688.1
(-1.7)
P 		2016
B 2200.4
(3)
P 		2210.3
(3)
P 		1419.4
(-0.9)
P 		1374.9
(-1.1)
P 		1362.4
(-1.2)
P 		985.2
(-3)
P 		1225
C 5262.4
(3)
P 		2142
(-1.5)
P 		2724.9
(-0.7)
P 		1197.5
(-2.9)
P 		2060.7
(-1.7)
P 		1138.9
(-3)
P 		4124
avr 3100.1
(3) 		2542.7
(1.2) 		1952.9
(-0.8) 		1486.8
(-2.3) 		1561
(-2) 		1270.7
(-3) 		1829
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1408
1 2 3 4 range
A 1525.9
(3)
P 		666.1
(-0.7)
P 		1103
(1.2)
P 		117.9
(-3)
P 		1408
B 1058.2
(3)
P 		1012.8
(2.7)
P 		778.3
(1)
P 		222.4
(-3)
P 		836
C 1349.1
(2.7)
P 		1295.4
(2.5)
P 		1412.8
(3)
P 		131.8
(-3)
P 		1281
avr 1311.1
(3) 		991.4
(1.3) 		1098
(1.9) 		157.4
(-3) 		1154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1710
1 2 3 4 5 6 range
A 338.7
(-3)
P 		1165
(3)
P 		373.3
(-2.7)
P 		478.9
(-2)
P 		380.2
(-2.7)
P 		411
(-2.5)
P 		826
B 765.6
(3)
P 		735.7
(2.6)
P 		344.7
(-3)
P 		364.2
(-2.7)
P 		553.5
(-0)
P 		367.4
(-2.7)
P 		421
C 1950.6
(3)
P 		653.6
(-1.6)
P 		693.5
(-1.4)
P 		240.8
(-3)
P 		666.8
(-1.5)
P 		381.3
(-2.5)
P 		1710
avr 1018.3
(3) 		851.4
(1.5) 		470.5
(-2) 		361.3
(-3) 		533.5
(-1.4) 		386.6
(-2.8) 		657
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175685_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19896
Sequence Type Exemplar sequence
Representative Public ID 4579711 NCBI
Target Description g4579711 /REP_DB=GenBank Identifier /GB=AB009567.1 /PROTEIN_GB=BAA75067.1 /CHR=4 /FEA=Mapped Transcript /DEF=Vha11 protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028280 NCBI Caenorhabditis elegans Vacuolar H ATPase family member (vha-11) (vha-11) mRNA, complete cds. 11/11 None
Y38F2AL.3a ENSEMBL cdna:known chromosome:CEL140:IV:2307816:2314566:-1 gene:Y38F2AL.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023928 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023935 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177017 2 1 NM_001028280 175685_s_at (11), 177139_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2307822-2314574(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y38F2AL.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023451 Vacuolar H ATPase family member (vha-11) [Caenorhabditis elegans] gb|AAF59474.3| Vacuolar h atpase protein 11, isoform a [Caenorhabditis elegans] sp|Q9XXU9|VATC_CAEEL Vacuolar ATP synthase subunit C (V-ATPase C subunit) (Vacuolar proton pump C subunit) dbj|BAA75067.1| Vha11 protein [Caenorhabditis elegans] 0.0
blast CAE70305 Hypothetical protein CBG16826 [Caenorhabditis briggsae] 0.0
blast AAH83532 Atp6v1c1l protein [Danio rerio] ref|XP_686493.1| PREDICTED: similar to Atp6v1c1l protein [Danio rerio] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR004907 EMBL-EBI V-ATPase subunit C 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175685_S_AT
gccagctctcatgtcgctgggtgtgaacgaatattatccatacgtcttcttcaagctgaa
tatcgattttttgaacaagtgatgacgtcatctggataccaccgaattttgtacacacac
attcccccctccatcaccacccaagaacaaaaatttttttttttcgaatttcttattttt
ttaccccaattttcctgtgatagtcgcaatttttcactacacccaattaaaaaaaaacat
ttttcaaaattttatgacaaaaaatataacgatttttacaagttttagaagtagtagatt
ggcctaaaatttagtgtaattttagatgaaatttcacttatatgctcgccttcccgtctt
ttttttggaatttttcctttattttttagggataaattccgcgcctttactcttattatg
tatgacaaactacaacattcagtcagtcagtcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGCTCTCATGTCGCTGGGTGTG 487 279 1121 Antisense
CGCTGGGTGTGAACGAATATTATCC 155 255 1135 Antisense
ATATTATCCATACGTCTTCTTCAAG 523 19 1151 Antisense
CCATACGTCTTCTTCAAGCTGAATA 673 267 1158 Antisense
TGATGACGTCATCTGGATACCACCG 258 567 1200 Antisense
GGATACCACCGAATTTTGTACACAC 246 509 1214 Antisense
GAATTTTGTACACACACATTCCCCC 469 323 1224 Antisense
ACCCCAATTTTCCTGTGATAGTCGC 109 91 1303 Antisense
TAGTCGCAATTTTTCACTACACCCA 278 653 1321 Antisense
AAATTTCACTTATATGCTCGCCTTC 220 117 1449 Antisense
TACAACATTCAGTCAGTCAGTCCCC 478 641 1551 Antisense
Sequence Source GenBank