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[175684_at] gephyrin like

Description g2811219 /REP_DB=GenBank Identifier /GB=AF042069.1 /PROTEIN_GB=AAB97841.1 /CHR=5 /FEA=Mapped Transcript /DEF=LIN-46
Cluster 6grp_high1_10_10 > 53      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_total > 30      4grp_total > 40      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 121.9
(-2.5)
P 		109.5
(-3)
P 		254.1
(3)
P 		131.6
(-2.1)
P 		145
B 121
(-3)
P 		143.8
(-2)
P 		264
(3)
P 		188.8
(-0.2)
P 		143
C 111.8
(-3)
P 		169.9
(-1.7)
P 		383.6
(3)
P 		180.8
(-1.5)
P 		272
avr 118.2
(-3) 		141.1
(-2.2) 		300.6
(3) 		167.1
(-1.4) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 73.9
(-3)
A 		130.7
(0.5)
P 		171.1
(3)
P 		122.3
(-0)
P 		90.3
(-2)
P 		85.6
(-2.3)
P 		97
B 97.1
(-1.5)
P 		131
(1.4)
P 		126.4
(1)
P 		150.2
(3)
P 		79.6
(-3)
P 		102.5
(-1.1)
P 		71
C 105.3
(-1.3)
P 		145.6
(2.7)
P 		148.4
(3)
P 		96
(-2.2)
P 		88
(-3)
P 		89.3
(-2.9)
P 		60
avr 92.1
(-2.4) 		135.8
(1.8) 		148.6
(3) 		122.8
(0.5) 		86
(-3) 		92.5
(-2.4) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 44.4
(0.2)
P 		23.8
(-2.4)
P 		66.4
(3)
P 		19.3
(-3)
P 		47
B 38.6
(-2.3)
P 		35.5
(-3)
P 		61.2
(3)
P 		40.2
(-1.9)
P 		26
C 37
(-2.6)
P 		48.8
(-1.9)
P 		133.7
(3)
P 		30.5
(-3)
P 		103
avr 40
(-1.9) 		36
(-2.4) 		87.1
(3) 		30
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 13.6
(-3)
A 		46.5
(3)
P 		37.3
(1.3)
P 		31
(0.2)
P 		27.2
(-0.5)
P 		20.8
(-1.7)
P 		33
B 33.8
(-1.6)
P 		43.6
(3)
P 		30.7
(-3)
P 		39.8
(1.2)
P 		32.3
(-2.3)
P 		38.2
(0.5)
P 		13
C 39
(1.7)
P 		44.4
(3)
P 		37.8
(1.4)
P 		19.3
(-3)
P 		28.5
(-0.8)
P 		29.9
(-0.5)
P 		25
avr 28.8
(-3) 		44.8
(3) 		35.3
(-0.6) 		30
(-2.6) 		29.3
(-2.8) 		29.6
(-2.7) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19920
Sequence Type Exemplar sequence
Representative Public ID 2811219 NCBI
Target Description g2811219 /REP_DB=GenBank Identifier /GB=AF042069.1 /PROTEIN_GB=AAB97841.1 /CHR=5 /FEA=Mapped Transcript /DEF=LIN-46
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073845 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-46) (lin-46) mRNA, complete cds. 11/11 A 
R186.4 ENSEMBL cdna:known chromosome:CEL140:V:12971445:12973322:1 gene:R186.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011790 7/11 Cross Hyb Matching Probes None
GENEFINDER00000011796 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12971444-12973322(+) 100.0 100.0
Public Domain and Genome References
Gene Title gephyrin like
Gene Symbol lin-46
Ensembl R186.4
Entrez Gene 179782 Entrez gene
SwissProt Q22010 EMBL-EBI
WormBase CE27771 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6777 Mo-molybdopterin cofactor biosynthesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01440 Hypothetical protein R186.4 [Caenorhabditis elegans] ref|NP_506246.1| abnormal cell LINeage family member (lin-46) [Caenorhabditis elegans] gb|AAB97842.1| LIN-46 [Caenorhabditis elegans] gb|AAB97841.1| LIN-46 [Caenorhabditis elegans] 0.0
blast CAE64704 Hypothetical protein CBG09490 [Caenorhabditis briggsae] 1.0E-84
blast CAE58791 Hypothetical protein CBG01997 [Caenorhabditis briggsae] 7.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR005110 EMBL-EBI MoeA N-terminal region, domain I and II 1.6E-54
Sequence
Target Sequence 
>C. ELEGANS:175684_AT
ggagcaaatctgtttgtttcaccaattttacgtgcaatggaagggcaaaattctgaaaca
agccataggttcaaagctgaactgacacaacctatatcgaaaacgtcggagacaagattt
ttgcgagctcgaagcgaagtttctaagggaaatctaatttcaacaccactaggctgtgaa
gatatctttggagctaattcgattttagaagtaaaatccaacacttgtttttcggccgga
gacgtggttgatctacgctttgcatgaaaattcaccagtatcaatatttccttttttttt
gtttttactcggtgcttttatacctccattctgatatgatctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAAATCTGTTTGTTTCACCAA 697 519 958 Antisense
GTTTCACCAATTTTACGTGCAATGG 21 451 973 Antisense
GCTGAACTGACACAACCTATATCGA 542 295 1033 Antisense
GACAAGATTTTTGCGAGCTCGAAGC 341 365 1068 Antisense
ATCTAATTTCAACACCACTAGGCTG 350 27 1109 Antisense
TCCAACACTTGTTTTTCGGCCGGAG 569 585 1174 Antisense
TTTTCGGCCGGAGACGTGGTTGATC 99 677 1186 Antisense
GTGGTTGATCTACGCTTTGCATGAA 69 489 1201 Antisense
AATTCACCAGTATCAATATTTCCTT 692 175 1226 Antisense
TACTCGGTGCTTTTATACCTCCATT 173 643 1263 Antisense
ATACCTCCATTCTGATATGATCTGT 517 23 1277 Antisense
Sequence Source GenBank