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[175683_s_at]

Description g2308978 /REP_DB=GenBank Identifier /GB=AB000913.1 /PROTEIN_GB=BAA21715.1 /CHR=1 /FEA=Mapped Transcript /DEF=UNC-14
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 22      6grp_total > 14      4grp_total > 30      6grp_highest_sub > 02      6grp_cgc > 41      6grp_high1_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2149
1 2 3 4 range
A 2501.1
(3)
P 		1753.7
(-1)
P 		1370.3
(-3)
P 		1625.3
(-1.6)
P 		1131
B 3147.6
(3)
P 		1243.5
(-2.3)
P 		999.1
(-3)
P 		2169.9
(0.3)
P 		2149
C 2187.1
(3)
P 		1446.6
(-1.6)
P 		1227.2
(-3)
P 		2139.6
(2.7)
P 		960
avr 2611.9
(3) 		1481.3
(-1.8) 		1198.9
(-3) 		1978.3
(0.3) 		1413

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1093
1 2 3 4 5 6 range
A 2100.4
(2)
P 		2258
(3)
P 		1303.8
(-3)
P 		1510.1
(-1.7)
P 		1483.4
(-1.9)
P 		1338.9
(-2.8)
P 		954
B 2113.4
(2.2)
P 		2262.7
(3)
P 		1195.5
(-3)
P 		1832.9
(0.6)
P 		1218.3
(-2.9)
P 		1399.6
(-1.9)
P 		1067
C 1961.9
(1.1)
P 		2288.3
(3)
P 		2029.1
(1.5)
P 		1736.7
(-0.3)
P 		1329.9
(-2.7)
P 		1275
(-3)
P 		1013
avr 2058.6
(1.6) 		2269.7
(3) 		1509.5
(-1.9) 		1693.2
(-0.7) 		1343.9
(-3) 		1337.8
(-3) 		932
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 772
1 2 3 4 range
A 910.6
(3)
P 		380.7
(-1.7)
P 		358.2
(-1.9)
P 		237.9
(-3)
P 		673
B 1003.7
(3)
P 		307.1
(-2.4)
P 		231.5
(-3)
P 		462.4
(-1.2)
P 		772
C 724
(3)
P 		415.9
(-2.1)
P 		427.7
(-1.9)
P 		360.8
(-3)
P 		363
avr 879.4
(3) 		367.9
(-2.7) 		339.1
(-3) 		353.7
(-2.8) 		540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 387.2
(-1.8)
P 		803.1
(3)
P 		283.9
(-3)
P 		383
(-1.9)
P 		447.6
(-1.1)
P 		326
(-2.5)
P 		519
B 735.3
(2.8)
P 		753.1
(3)
P 		290.3
(-3)
P 		485.5
(-0.5)
P 		495
(-0.3)
P 		521.9
(0)
P 		463
C 727.2
(3)
P 		698.2
(2.5)
P 		516.4
(-0.3)
P 		349.2
(-3)
P 		430.3
(-1.7)
P 		426.8
(-1.8)
P 		378
avr 616.6
(0.9) 		751.5
(3) 		363.5
(-3) 		405.9
(-2.3) 		457.6
(-1.5) 		424.9
(-2.1) 		388
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175683_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19646
Sequence Type Exemplar sequence
Representative Public ID 2308978 NCBI
Target Description g2308978 /REP_DB=GenBank Identifier /GB=AB000913.1 /PROTEIN_GB=BAA21715.1 /CHR=1 /FEA=Mapped Transcript /DEF=UNC-14
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059617(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059617 NCBI Caenorhabditis elegans UNCoordinated family member (unc-14) (unc-14) mRNA, complete cds. 11/11 A 
K10D3.2 ENSEMBL cdna:known chromosome:CEL140:I:7130744:7136555:-1 gene:K10D3.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7130674-7136488(-) 98.94 100.0
Public Domain and Genome References
Gene Title
Gene Symbol unc-14
Ensembl K10D3.2
Entrez Gene 172450 Entrez gene
SwissProt O15940 EMBL-EBI
WormBase CE25055 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61025 Hypothetical protein K10D3.2 [Caenorhabditis elegans] ref|NP_492018.1| UNCoordinated family member (unc-14) [Caenorhabditis elegans] dbj|BAA21715.1| UNC-14 [Caenorhabditis elegans] 0.0
blast CAE74238 Hypothetical protein CBG21923 [Caenorhabditis briggsae] 0.0
blast T23571 hypothetical protein K10D3.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004012 EMBL-EBI RUN domain 3.1E-37
Sequence
Target Sequence 
>C. ELEGANS:175683_S_AT
cttcttttccagtgaacactctgtactttatttttttcttgaactttaatttttttccga
tgcttcatataattctagtcatgccacccaattcaaccgagtttgatcccccatcccatg
cattcatcgttttccctcaatgatactcatttctttttcatgttcaactgaattcatgaa
aaatgtttgaaaactttcaaatatttttttgaatttaaaagtcattagatagcctctctt
ttccctccggtttcctccaattttgctccttctatcttcgtatagaagaaaattgcttta
tttccttcctttttcagctaaaatcgaggcaactattggattctttgcagcttgccaaaa
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTTTTCCAGTGAACACTCTGTA 131 219 2284 Antisense
CACTCTGTACTTTATTTTTTTCTTG 52 199 2300 Antisense
TTTTCCGATGCTTCATATAATTCTA 630 675 2336 Antisense
TATAATTCTAGTCATGCCACCCAAT 293 661 2351 Antisense
TGCCACCCAATTCAACCGAGTTTGA 540 583 2365 Antisense
CATCGTTTTCCCTCAATGATACTCA 47 211 2408 Antisense
TCATTTCTTTTTCATGTTCAACTGA 1 621 2430 Antisense
AGTCATTAGATAGCCTCTCTTTTCC 555 61 2503 Antisense
TTGCTCCTTCTATCTTCGTATAGAA 148 699 2546 Antisense
ATCGAGGCAACTATTGGATTCTTTG 475 29 2606 Antisense
GGATTCTTTGCAGCTTGCCAAAACA 29 509 2621 Antisense
Sequence Source GenBank