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[175681_at]

Description g706972 /REP_DB=GenBank Identifier /GB=U21282.1 /PROTEIN_GB=AAA84395.1 /CHR=5 /FEA=Mapped Transcript /DEF=cyclin B3
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 88      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 89      6grp_total > 89      4grp_total > 50      6grp_highest_sub > Cu      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 971
1 2 3 4 range
A 535.7
(-3)
P 		1182.6
(3)
P 		906.9
(0.5)
P 		530.8
(-3)
P 		652
B 505
(-3)
P 		1217
(3)
P 		1003.6
(1.2)
P 		523.3
(-2.8)
P 		712
C 720.4
(-0.9)
P 		1348.3
(3)
P 		884
(0.1)
P 		377.6
(-3)
P 		971
avr 587
(-2.1) 		1249.3
(3) 		931.5
(0.5) 		477.2
(-3) 		772

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3641
1 2 3 4 5 6 range
A 995.1
(-2)
P 		599.5
(-2.7)
P 		465.2
(-3)
P 		545.9
(-2.8)
P 		2554.7
(0.9)
P 		3669.7
(3)
P 		3205
B 929.5
(-2.3)
P 		794.7
(-2.5)
P 		497
(-3)
P 		634.6
(-2.8)
P 		2476.7
(0.3)
P 		4047.7
(3)
P 		3551
C 887
(-2.1)
P 		796.8
(-2.3)
P 		407.2
(-3)
P 		516.5
(-2.8)
P 		2293.2
(0.5)
P 		3595.2
(3)
P 		3188
avr 937.2
(-2.1) 		730.3
(-2.5) 		456.5
(-3) 		565.7
(-2.8) 		2441.5
(0.6) 		3770.9
(3) 		3314
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 195.1
(0.9)
P 		256.7
(3)
P 		237.1
(2.3)
P 		77.7
(-3)
P 		179
B 161
(-1.4)
P 		300.6
(3)
P 		232.6
(0.8)
P 		111.5
(-3)
P 		189
C 238.5
(0.2)
P 		387.6
(3)
P 		308.1
(1.5)
P 		63.7
(-3)
P 		324
avr 198.2
(-0) 		315
(3) 		259.3
(1.6) 		84.3
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1408
1 2 3 4 5 6 range
A 183.4
(-2.4)
P 		213.2
(-2.2)
P 		101.3
(-3)
P 		138.5
(-2.7)
P 		770.9
(2.1)
P 		893.5
(3)
P 		792
B 323.4
(-2.1)
P 		264.5
(-2.4)
P 		120.7
(-3)
P 		168.1
(-2.8)
P 		1006.2
(0.8)
P 		1509.4
(3)
P 		1389
C 328.8
(-1.8)
P 		243.1
(-2.2)
P 		103.6
(-3)
P 		103.9
(-3)
P 		742
(0.5)
P 		1203.5
(3)
P 		1100
avr 278.5
(-2.1) 		240.3
(-2.3) 		108.5
(-3) 		136.8
(-2.8) 		839.7
(1) 		1202.1
(3) 		1094
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175681_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19937
Sequence Type Exemplar sequence
Representative Public ID 706972 NCBI
Target Description g706972 /REP_DB=GenBank Identifier /GB=U21282.1 /PROTEIN_GB=AAA84395.1 /CHR=5 /FEA=Mapped Transcript /DEF=cyclin B3
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074424(11), NM_001028941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074424 NCBI Caenorhabditis elegans CYclin B family member (cyb-3) (cyb-3) mRNA, complete cds. 11/11 A 
NM_001028941 NCBI Caenorhabditis elegans CYclin B family member (cyb-3) (cyb-3) mRNA, complete cds. 11/11 None
T06E6.2a.1 ENSEMBL cdna:known chromosome:CEL140:V:15398281:15399935:1 gene:T06E6.2 11/11 None
T06E6.2b ENSEMBL cdna:known chromosome:CEL140:V:15398282:15399937:1 gene:T06E6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15398288-15399935(+) 100.0 100.0
Public Domain and Genome References
Ensembl T06E6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA84395 cyclin B3 0.0
blast CAB03311 Hypothetical protein T06E6.2a [Caenorhabditis elegans] ref|NP_506825.3| CYclin B family member (cyb-3) [Caenorhabditis elegans] sp|Q10654|CCNB3_CAEEL G2/mitotic-specific cyclin B3 0.0
blast CAC42336 Hypothetical protein T06E6.2b [Caenorhabditis elegans] ref|NP_001024112.1| CYclin B family member (cyb-3) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 1.6E-37
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 9.2E-45
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 1.6E-37
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 9.2E-45
Sequence
Target Sequence 
>C. ELEGANS:175681_AT
tctcatacccataactaatcctaatttattcccgtattggattctgaatcccctctcaac
tgttcacccaccaaaactttcaaacgattgacacctatgcctcttttgatatattttgta
tacgtattgcaattctcttctgtattccatttaactcctgtcatctctcacaaatacaca
tacgcaattttggcctgattttgttttttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCATACCCATAACTAATCCTAAT 454 613 1167 Antisense
TAATCCTAATTTATTCCCGTATTGG 82 637 1182 Antisense
ATTGGATTCTGAATCCCCTCTCAAC 689 3 1202 Antisense
TCACCCACCAAAACTTTCAAACGAT 616 623 1230 Antisense
CAAACGATTGACACCTATGCCTCTT 247 191 1247 Antisense
GACACCTATGCCTCTTTTGATATAT 403 367 1256 Antisense
GTATTGCAATTCTCTTCTGTATTCC 252 453 1290 Antisense
GTATTCCATTTAACTCCTGTCATCT 291 453 1308 Antisense
GTCATCTCTCACAAATACACATACG 621 467 1326 Antisense
TACACATACGCAATTTTGGCCTGAT 243 643 1341 Antisense
TTTTGGCCTGATTTTGTTTTTTGCT 286 679 1354 Antisense
Sequence Source GenBank