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[175680_at] LIM domain containing protein

Description g2661097 /REP_DB=GenBank Identifier /GB=AF035583.1 /PROTEIN_GB=AAD09435.1 /CHR=X /FEA=Mapped Transcript /DEF=UNC-97
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 12      6grp_total > 04      4grp_total > 60      6grp_cgc > 41      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3075
1 2 3 4 range
A 3029.4
(3)
P 		2284.6
(1.3)
P 		2518.1
(1.8)
P 		368
(-3)
P 		2661
B 3121.8
(3)
P 		2788.7
(2.2)
P 		2162.3
(0.8)
P 		539.8
(-3)
P 		2582
C 2791.9
(1.7)
P 		3127.7
(2.4)
P 		3442.7
(3)
P 		414.6
(-3)
P 		3028
avr 2981
(3) 		2733.7
(2.4) 		2707.7
(2.4) 		440.8
(-3) 		2540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2510
1 2 3 4 5 6 range
A 3497.9
(3)
P 		2164.6
(-0.3)
P 		2175.2
(-0.3)
P 		1864.7
(-1)
P 		1812.1
(-1.1)
P 		1057.1
(-3)
P 		2441
B 3401.1
(3)
P 		2795.5
(1.5)
P 		1087.9
(-2.8)
P 		2340.1
(0.4)
P 		1496.5
(-1.7)
P 		988.1
(-3)
P 		2413
C 2845.5
(3)
P 		1987.3
(0.1)
P 		2020.6
(0.2)
P 		1944.8
(-0.1)
P 		1787.5
(-0.6)
P 		1083
(-3)
P 		1763
avr 3248.2
(3) 		2315.8
(0.5) 		1761.2
(-1) 		2049.9
(-0.3) 		1698.7
(-1.2) 		1042.7
(-3) 		2206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1146
1 2 3 4 range
A 1103
(3)
P 		495.9
(-0.5)
P 		658.3
(0.5)
P 		53.9
(-3)
P 		1049
B 995.5
(3)
P 		688.7
(0.9)
P 		501.1
(-0.4)
P 		115
(-3)
P 		881
C 924.2
(1.5)
P 		899.2
(1.4)
P 		1199.9
(3)
P 		69.9
(-3)
P 		1130
avr 1007.6
(3) 		694.6
(1) 		786.4
(1.6) 		79.6
(-3) 		928

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 926
1 2 3 4 5 6 range
A 644.8
(1.5)
P 		769.9
(3)
P 		473.7
(-0.5)
P 		472.9
(-0.5)
P 		546.8
(0.4)
P 		257.4
(-3)
P 		513
B 1183.4
(3)
P 		930.5
(1.3)
P 		264.2
(-3)
P 		619.8
(-0.7)
P 		608
(-0.8)
P 		368.5
(-2.3)
P 		919
C 1054.7
(3)
P 		606.4
(-0.9)
P 		514.3
(-1.7)
P 		391.1
(-2.8)
P 		578.4
(-1.1)
P 		362.5
(-3)
P 		692
avr 961
(3) 		768.9
(1.2) 		417.4
(-2.2) 		494.6
(-1.4) 		577.7
(-0.6) 		329.5
(-3) 		632
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19972
Sequence Type Exemplar sequence
Representative Public ID 2661097 NCBI
Target Description g2661097 /REP_DB=GenBank Identifier /GB=AF035583.1 /PROTEIN_GB=AAD09435.1 /CHR=X /FEA=Mapped Transcript /DEF=UNC-97
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076542(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076542 NCBI Caenorhabditis elegans UNCoordinated family member (unc-97) (unc-97) mRNA, complete cds. 11/11 A 
F14D12.2 ENSEMBL cdna:known chromosome:CEL140:X:5593086:5594924:1 gene:F14D12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5593089-5594926(+) 100.0 100.0
Public Domain and Genome References
Gene Title LIM domain containing protein
Gene Symbol unc-97
Ensembl F14D12.2
Entrez Gene 180827 Entrez gene
SwissProt P50464 EMBL-EBI
WormBase CE04392 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625223_A_AT steamer duck dm
DROSGENOME1:154860_AT steamer duck dm
CHICKEN:GGA.1187.2.S1_S_AT similar to PINCH-1 gga
CHICKEN:GGA.15049.1.S1_S_AT similar to PINCH-1 gga
CHICKEN:GGAAFFX.11956.1.S1_AT similar to PINCH-1 gga
CHICKEN:GGAAFFX.21814.1.S1_S_AT similar to PINCH-1 gga
HG-U133_PLUS_2:207198_S_AT LIM and senescent cell antigen-like domains 1 hs
HG-U133A:207198_S_AT LIM and senescent cell antigen-like domains 1 hs
HG-FOCUS:207198_S_AT LIM and senescent cell antigen-like domains 1 hs
HG-U133A_2:207198_S_AT LIM and senescent cell antigen-like domains 1 hs
HU35KSUBA:U09284_AT LIM and senescent cell antigen-like domains 1 hs
HUGENEFL:U09284_AT LIM and senescent cell antigen-like domains 1 hs
U133_X3P:G13518025_3P_A_AT LIM and senescent cell antigen-like domains 1 hs
U133_X3P:HS2.382040.1.S1_3P_AT LIM and senescent cell antigen-like domains 1 hs
HG-U133_PLUS_2:1570259_AT LIM and senescent cell antigen-like domains 1 hs
HG-U95AV2:39232_AT LIM and senescent cell antigen-like domains 1 hs
HU35KSUBA:T63174_S_AT LIM and senescent cell antigen-like domains 1 hs
HU35KSUBC:RC_W80814_AT LIM and senescent cell antigen-like domains 1 hs
U133_X3P:HS2.293746.1.S1_3P_AT LIM and senescent cell antigen-like domains 1 hs
U133_X3P:HS.193700.0.S1_3P_AT LIM and senescent cell antigen-like domains 1 hs
HG-U133_PLUS_2:1566129_AT LIM and senescent cell antigen-like domains 1 hs
HG-U133A_2:212687_AT LIM and senescent cell antigen-like domains 1 hs
HG-U133_PLUS_2:212687_AT LIM and senescent cell antigen-like domains 1 hs
HG-U133A:212687_AT LIM and senescent cell antigen-like domains 1 hs
HG-U95C:64027_AT LIM and senescent cell antigen-like domains 1 hs
HG-U95C:64028_S_AT LIM and senescent cell antigen-like domains 1 hs
HG-U95C:64029_R_AT LIM and senescent cell antigen-like domains 1 hs
HG-U95E:71957_AT LIM and senescent cell antigen-like domains 1 hs
HG-U95E:86070_AT LIM and senescent cell antigen-like domains 1 hs
MOE430B:1441411_AT LIM and senescent cell antigen-like domains 1 mm
MOUSE430_2:1441411_AT LIM and senescent cell antigen-like domains 1 mm
MU11KSUBA:AA274091_G_AT LIM and senescent cell antigen-like domains 1 mm
MU11KSUBA:AA274091_AT LIM and senescent cell antigen-like domains 1 mm
MG-U74AV2:104634_AT LIM and senescent cell antigen-like domains 1 mm
MG-U74BV2:112468_AT LIM and senescent cell antigen-like domains 1 mm
MOE430A:1418230_A_AT LIM and senescent cell antigen-like domains 1 mm
MOUSE430A_2:1418230_A_AT LIM and senescent cell antigen-like domains 1 mm
MOUSE430_2:1418230_A_AT LIM and senescent cell antigen-like domains 1 mm
MOE430A:1418231_AT LIM and senescent cell antigen-like domains 1 mm
MOUSE430A_2:1418231_AT LIM and senescent cell antigen-like domains 1 mm
MOUSE430_2:1418231_AT LIM and senescent cell antigen-like domains 1 mm
MOE430A:1418232_S_AT LIM and senescent cell antigen-like domains 1 mm
MOUSE430A_2:1418232_S_AT LIM and senescent cell antigen-like domains 1 mm
MOUSE430_2:1418232_S_AT LIM and senescent cell antigen-like domains 1 mm
MOE430B:1443947_AT LIM and senescent cell antigen-like domains 1 mm
MOUSE430_2:1443947_AT LIM and senescent cell antigen-like domains 1 mm
MG-U74BV2:115581_AT LIM and senescent cell antigen-like domains 1 (Lims1), mRNA mm
MG-U74BV2:116204_AT LIM and senescent cell antigen-like domains 1 (Lims1), mRNA mm
MG-U74CV2:131819_AT LIM and senescent cell antigen-like domains 1 (Lims1), mRNA mm
MU19KSUBB:TC33732_AT LIM and senescent cell antigen-like domains 1 (Lims1), mRNA mm
MU19KSUBC:TC37051_AT LIM and senescent cell antigen-like domains 1 (Lims1), mRNA mm
RG-U34A:RC_AA799637_AT similar to LIM and senescent cell antigen-like domains 1 rn
RG-U34A:RC_AA799637_G_AT similar to LIM and senescent cell antigen-like domains 1 rn
RAE230A:1385430_AT similar to LIM and senescent cell antigen-like domains 1 rn
RAT230_2:1385430_AT similar to LIM and senescent cell antigen-like domains 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5912 adherens junction inferred from direct assay QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82334 Uncoordinated protein 97 [Caenorhabditis elegans] ref|NP_508943.3| UNCoordinated family member (unc-97) [Caenorhabditis elegans] gb|AAD09435.1| UNC-97 [Caenorhabditis elegans] sp|P50464|UNC97_CAEEL LIM protein unc-97 (Uncoordinated protein 97) (PINCH homolog) 0.0
blast CAE68767 Hypothetical protein CBG14705 [Caenorhabditis briggsae] 0.0
blast XP_623943 PREDICTED: similar to CG7954-PA, isoform A [Apis mellifera] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.4E-18
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 5.3E-15
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.6E-9
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.1E-25
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.5E-15
Sequence
Target Sequence 
>C. ELEGANS:175680_AT
aaggagtccccgtaattcatcaatttccattaaagaagtaatactttccaaatgccattg
ctcatttctctttcccattgtttttaataccttggtgctaaaaaaaaacatcgtgaaaat
tgttatcaatccgttttgtcttttaaatgccttatatttcaaaactatttttcggtcaca
caaaaatgtcattgtactcatttctagctccataattgtccttccccttccctttcccag
ctactttttgattcagaagccttctgaaaacaatcataactttcgaccaaattttttgtg
ttcctatccgcaaaaactttgcatcttttctcgggtgtcattattgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAGTCCCCGTAATTCATCAATT 450 159 1108 Antisense
ATACTTTCCAAATGCCATTGCTCAT 671 23 1148 Antisense
CATTGTTTTTAATACCTTGGTGCTA 527 213 1183 Antisense
TGTTATCAATCCGTTTTGTCTTTTA 667 561 1228 Antisense
GTCATTGTACTCATTTCTAGCTCCA 573 467 1295 Antisense
TTTCTAGCTCCATAATTGTCCTTCC 73 673 1308 Antisense
GCTACTTTTTGATTCAGAAGCCTTC 268 303 1347 Antisense
AACAATCATAACTTTCGACCAAATT 223 135 1376 Antisense
CAAATTTTTTGTGTTCCTATCCGCA 373 189 1395 Antisense
GCAAAAACTTTGCATCTTTTCTCGG 256 317 1417 Antisense
TCTTTTCTCGGGTGTCATTATTGCA 525 615 1431 Antisense
Sequence Source GenBank