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[175677_s_at]

Description g6531660 /REP_DB=GenBank Identifier /GB=AF195610.1 /PROTEIN_GB=AAF15529.1 /CHR=1 /FEA=Mapped Transcript /DEF=LIN-41A
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 50      6grp_total > 27      4grp_total > 45      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 519
1 2 3 4 range
A 879.3
(3)
P 		828.1
(2.2)
P 		597.7
(-1.2)
P 		477.9
(-3)
P 		401
B 997.2
(3)
P 		674.1
(-1.9)
P 		604.5
(-3)
P 		639
(-2.5)
P 		393
C 892
(3)
P 		713.7
(-0.9)
P 		739.4
(-0.4)
P 		620.4
(-3)
P 		272
avr 922.8
(3) 		738.6
(-0.2) 		647.2
(-1.8) 		579.1
(-3) 		344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 658
1 2 3 4 5 6 range
A 887.9
(3)
P 		433.2
(-1.1)
P 		310.9
(-2.3)
P 		230
(-3)
P 		361.3
(-1.8)
P 		622.8
(0.6)
P 		658
B 728.8
(3)
P 		485.7
(-0.4)
P 		503
(-0.1)
P 		296.6
(-3)
P 		327.1
(-2.6)
P 		548.6
(0.5)
P 		432
C 851.2
(3)
P 		404.9
(-2.1)
P 		357.6
(-2.7)
P 		327.2
(-3)
P 		370.1
(-2.5)
P 		506.1
(-1)
P 		524
avr 822.6
(3) 		441.3
(-1.3) 		390.5
(-1.8) 		284.6
(-3) 		352.8
(-2.2) 		559.2
(0.1) 		538
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 320.1
(3)
P 		179.8
(-0.4)
P 		156.3
(-0.9)
P 		70
(-3)
P 		250
B 318
(3)
P 		166.5
(-2)
P 		140.1
(-2.9)
P 		136.2
(-3)
P 		182
C 295.3
(3)
P 		205.2
(0.2)
P 		257.7
(1.8)
P 		104.6
(-3)
P 		191
avr 311.1
(3) 		183.8
(-0.7) 		184.7
(-0.7) 		103.6
(-3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 163.7
(3)
P 		154.1
(2.5)
P 		67.7
(-2.5)
P 		58.3
(-3)
P 		109
(-0.1)
P 		151.6
(2.3)
P 		105
B 253.6
(3)
P 		161.7
(-0.2)
P 		122.1
(-1.5)
P 		78.6
(-3)
P 		132.9
(-1.1)
P 		204.6
(1.3)
P 		175
C 315.5
(3)
P 		123.5
(-1.6)
P 		91
(-2.4)
P 		65.8
(-3)
P 		119.8
(-1.7)
P 		169.4
(-0.5)
P 		250
avr 244.3
(3) 		146.4
(-0.3) 		93.6
(-2.1) 		67.6
(-3) 		120.6
(-1.2) 		175.2
(0.7) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175677_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19656
Sequence Type Exemplar sequence
Representative Public ID 6531660 NCBI
Target Description g6531660 /REP_DB=GenBank Identifier /GB=AF195610.1 /PROTEIN_GB=AAF15529.1 /CHR=1 /FEA=Mapped Transcript /DEF=LIN-41A
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025827(11), NM_001025828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025827 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-41) (lin-41) mRNA, complete cds. 11/11 None
NM_001025828 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-41) (lin-41) mRNA, complete cds. 11/11 None
C12C8.3b ENSEMBL cdna:known chromosome:CEL140:I:9342926:9350619:-1 gene:C12C8.3 11/11 A 
C12C8.3a ENSEMBL cdna:known chromosome:CEL140:I:9342926:9350020:-1 gene:C12C8.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9342856-9349951(-) 100.0 100.0
Public Domain and Genome References
Ensembl C12C8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42254 Hypothetical protein C12C8.3a [Caenorhabditis elegans] ref|NP_001020998.1| abnormal cell LINeage family member (lin-41) [Caenorhabditis elegans] gb|AAF15530.1| LIN-41B [Caenorhabditis elegans] 0.0
blast CAC42255 Hypothetical protein C12C8.3b [Caenorhabditis elegans] ref|NP_001020999.1| abnormal cell LINeage family member (lin-41) [Caenorhabditis elegans] gb|AAF15529.1| LIN-41A [Caenorhabditis elegans] 0.0
blast T19212 hypothetical protein C12C8.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000315 EMBL-EBI Zn-finger, B-box 1.2E-5
Pfam IPR001258 EMBL-EBI NHL repeat 3.7E-12
Pfam IPR001258 EMBL-EBI NHL repeat 2.8E-10
Pfam IPR001258 EMBL-EBI NHL repeat 1.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 6.5E-9
Pfam IPR001258 EMBL-EBI NHL repeat 2.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 5.2E-11
Pfam IPR001258 EMBL-EBI NHL repeat 3.7E-12
Pfam IPR001258 EMBL-EBI NHL repeat 2.8E-10
Pfam IPR001258 EMBL-EBI NHL repeat 1.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 6.5E-9
Pfam IPR001258 EMBL-EBI NHL repeat 2.7E-10
Pfam IPR001258 EMBL-EBI NHL repeat 5.2E-11
Sequence
Target Sequence 
>C. ELEGANS:175677_S_AT
tagcacctcttttcctcaaattgcaccaactcaagtataccttttatacaaccgttctac
actcaacgcgatgtaaatatcgcaatccctttttatacaaccattctgcctctgaaccat
tgaaaccttctcccgtactcccaccaatagattattgcacttttctgagagtttttctgt
gttggaatcataattttctaaactgattcgcataatttccaacactgaaaaactttctca
acacctctggtgactattttcttttccggtgttaattgtcccaattgcctaatgtcccca
gtgttcatttaagctccccatttatttttatttcactgtcttggtttttgtgccctagcg
ctaaatattgttttattttaatgcatgcttcctgcacgcccctcccccttcttgcgcacc
caattttacaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCACCTCTTTTCCTCAAATTGCA 143 653 4090 Antisense
CAACCGTTCTACACTCAACGCGATG 177 187 4138 Antisense
ATCGCAATCCCTTTTTATACAACCA 251 37 4168 Antisense
TTATACAACCATTCTGCCTCTGAAC 588 679 4182 Antisense
TCTGAACCATTGAAACCTTCTCCCG 436 607 4200 Antisense
AACTTTCTCAACACCTCTGGTGACT 442 139 4320 Antisense
TCTGGTGACTATTTTCTTTTCCGGT 271 607 4335 Antisense
TAATTGTCCCAATTGCCTAATGTCC 674 631 4362 Antisense
TGTCCCCAGTGTTCATTTAAGCTCC 439 557 4382 Antisense
TCACTGTCTTGGTTTTTGTGCCCTA 401 627 4422 Antisense
TTCTTGCGCACCCAATTTTACAACA 663 687 4498 Antisense
Sequence Source GenBank