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[175676_at]

Description g6538737 /REP_DB=GenBank Identifier /GB=AF200706.1 /PROTEIN_GB=AAF15883.1 /CHR=X /FEA=Mapped Transcript /DEF=UNC-84A
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 50      6grp_total > 16      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 623
1 2 3 4 range
A 513.8
(2.8)
P 		399.3
(1)
P 		529.1
(3)
P 		144.8
(-3)
P 		384
B 467.8
(1.9)
P 		502.6
(2.6)
P 		522
(3)
P 		216.2
(-3)
P 		306
C 470
(0.1)
P 		768
(3)
P 		519
(0.6)
P 		147.3
(-3)
P 		621
avr 483.9
(1.9) 		556.6
(3) 		523.4
(2.5) 		169.4
(-3) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 551
1 2 3 4 5 6 range
A 621.9
(3)
P 		592.5
(2.5)
P 		441.6
(-0.3)
P 		295.1
(-3)
P 		344.1
(-2.1)
P 		355.4
(-1.9)
P 		327
B 846.5
(3)
P 		532.1
(-0.6)
P 		421.9
(-1.8)
P 		427.3
(-1.8)
P 		319.8
(-3)
P 		386.6
(-2.2)
P 		527
C 612.4
(3)
P 		575.2
(2.3)
P 		404.1
(-1.1)
P 		472.9
(0.3)
P 		304.9
(-3)
P 		411.2
(-0.9)
P 		308
avr 693.6
(3) 		566.6
(0.9) 		422.5
(-1.4) 		398.4
(-1.8) 		322.9
(-3) 		384.4
(-2) 		371
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 187.1
(3)
P 		86.7
(-0.6)
P 		138.3
(1.2)
P 		21.2
(-3)
P 		166
B 149.2
(3)
P 		124.1
(1.5)
P 		120.9
(1.4)
P 		46.1
(-3)
P 		103
C 155.6
(1)
P 		220.8
(3)
P 		180.9
(1.8)
P 		24.8
(-3)
P 		196
avr 164
(3) 		143.9
(2.1) 		146.7
(2.2) 		30.7
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 114.6
(-1.2)
P 		210.7
(3)
P 		96.2
(-2.1)
P 		74.8
(-3)
P 		103.8
(-1.7)
P 		86.5
(-2.5)
P 		136
B 294.5
(3)
P 		177.1
(-0.7)
P 		102.4
(-3)
P 		113.2
(-2.7)
P 		129.9
(-2.1)
P 		144.2
(-1.7)
P 		192
C 227
(3)
P 		175.5
(0.7)
P 		102.8
(-2.6)
P 		95.1
(-3)
P 		98.7
(-2.8)
P 		137.6
(-1.1)
P 		132
avr 212
(3) 		187.8
(1.8) 		100.5
(-2.7) 		94.4
(-3) 		110.8
(-2.2) 		122.8
(-1.6) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175676_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20010
Sequence Type Exemplar sequence
Representative Public ID 6538737 NCBI
Target Description g6538737 /REP_DB=GenBank Identifier /GB=AF200706.1 /PROTEIN_GB=AAF15883.1 /CHR=X /FEA=Mapped Transcript /DEF=UNC-84A
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029536(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029536 NCBI Caenorhabditis elegans UNCoordinated family member (unc-84) (unc-84) mRNA, complete cds. 11/11 None
F54B11.3a ENSEMBL cdna:known chromosome:CEL140:X:13584694:13589742:1 gene:F54B11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181480 2 1 NM_001029536 175676_at (11), 177105_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13584686-13589742(+) 100.0 100.0
Public Domain and Genome References
Ensembl F54B11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94142 Hypothetical protein F54B11.3a [Caenorhabditis elegans] ref|NP_001024707.1| UNCoordinated family member (unc-84) [Caenorhabditis elegans] gb|AAF15883.1| UNC-84A [Caenorhabditis elegans] sp|Q20745|UNC84_CAEEL Nuclear migration and anchoring protein unc-84 (Uncoordinated protein 84) 0.0
blast T22608 hypothetical protein F54B11.3 - Caenorhabditis elegans 0.0
blast CAC42306 Hypothetical protein F54B11.3b [Caenorhabditis elegans] ref|NP_001024708.1| UNCoordinated family member (unc-84) [Caenorhabditis elegans] gb|AAF15884.1| UNC-84B [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024707.1 7 117-134,138-157,390-412,508-530,678-700,715-737,757-779
F54B11.3a 7 117-134,138-157,390-412,508-530,678-700,715-737,757-779
Sequence
Target Sequence 
>C. ELEGANS:175676_AT
atggtcaaattttcaatttccattgatctgattccgaaatgtttcaatttcacccctctc
ctgccaatttttcaaatcacaattcattttcccaaatttttccagttcccttgttatatt
tttagcgcgtgtccattttttttcaaagtatagaatatcattacattttcatgcagttta
ccggtctcctgaatacttggcctgaatatatttgaatgcaaaaccaatcactctctattt
ctctgcagcctttaccccctgatctcaaaatact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTCAAATTTTCAATTTCCATTG 273 51 3384 Antisense
TTTCCATTGATCTGATTCCGAAATG 671 667 3400 Antisense
ATCACAATTCATTTTCCCAAATTTT 626 27 3459 Antisense
TCCAGTTCCCTTGTTATATTTTTAG 176 591 3484 Antisense
GTTATATTTTTAGCGCGTGTCCATT 353 447 3496 Antisense
TTAGCGCGTGTCCATTTTTTTTCAA 348 681 3505 Antisense
CATTTTCATGCAGTTTACCGGTCTC 672 215 3547 Antisense
GTTTACCGGTCTCCTGAATACTTGG 184 447 3559 Antisense
GTCTCCTGAATACTTGGCCTGAATA 497 471 3567 Antisense
GCAAAACCAATCACTCTCTATTTCT 547 317 3601 Antisense
CTTTACCCCCTGATCTCAAAATACT 673 219 3633 Antisense
Sequence Source GenBank