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[175675_s_at]

Description g6538739 /REP_DB=GenBank Identifier /GB=AF200707.1 /PROTEIN_GB=AAF15884.1 /CHR=X /FEA=Mapped Transcript /DEF=UNC-84B
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 51      6grp_total > 26      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 24      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 470.9
(1.5)
P 		518.2
(3)
P 		493.5
(2.2)
P 		331.8
(-3)
P 		186
B 529.7
(2.7)
P 		542.8
(3)
P 		434.2
(0.2)
P 		306.4
(-3)
P 		236
C 498.2
(1.9)
P 		534.2
(3)
P 		459.6
(0.8)
P 		330.2
(-3)
P 		204
avr 499.6
(2.1) 		531.7
(3) 		462.4
(1) 		322.8
(-3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 435
1 2 3 4 5 6 range
A 726.8
(3)
P 		727
(3)
P 		397.8
(-3)
P 		517.6
(-0.8)
P 		396.9
(-3)
P 		555.4
(-0.1)
P 		330
B 636.2
(3)
P 		601.7
(2.3)
P 		515.9
(0.5)
P 		450.6
(-0.9)
P 		348.1
(-3)
P 		500.2
(0.2)
P 		288
C 783
(3)
P 		529.1
(-2.4)
P 		647.8
(0.1)
P 		529.3
(-2.4)
P 		549.9
(-2)
P 		502.5
(-3)
P 		281
avr 715.3
(3) 		619.3
(1) 		520.5
(-1.1) 		499.2
(-1.6) 		431.6
(-3) 		519.4
(-1.1) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 171.4
(3)
P 		112.5
(0.1)
P 		129
(0.9)
P 		48.6
(-3)
P 		123
B 168.9
(3)
P 		134.1
(1)
P 		100.6
(-1)
P 		65.3
(-3)
P 		104
C 164.9
(3)
P 		153.6
(2.4)
P 		160.2
(2.7)
P 		55.7
(-3)
P 		109
avr 168.4
(3) 		133.4
(1.1) 		129.9
(0.9) 		56.5
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 134
(-1.3)
P 		258.6
(3)
P 		86.6
(-3)
P 		131.3
(-1.4)
P 		119.8
(-1.8)
P 		135.2
(-1.3)
P 		172
B 221.4
(3)
P 		200.3
(1.8)
P 		125.3
(-2.6)
P 		119.3
(-3)
P 		141.4
(-1.7)
P 		186.5
(0.9)
P 		102
C 290.2
(3)
P 		161.4
(-1.2)
P 		164.9
(-1.1)
P 		106.4
(-3)
P 		177.9
(-0.7)
P 		168.2
(-1)
P 		184
avr 215.2
(3) 		206.8
(2.5) 		125.6
(-2.6) 		119
(-3) 		146.4
(-1.3) 		163.3
(-0.2) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175675_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20026
Sequence Type Exemplar sequence
Representative Public ID 6538739 NCBI
Target Description g6538739 /REP_DB=GenBank Identifier /GB=AF200707.1 /PROTEIN_GB=AAF15884.1 /CHR=X /FEA=Mapped Transcript /DEF=UNC-84B
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029536(11), NM_001029537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029536 NCBI Caenorhabditis elegans UNCoordinated family member (unc-84) (unc-84) mRNA, complete cds. 11/11 None
NM_001029537 NCBI Caenorhabditis elegans UNCoordinated family member (unc-84) (unc-84) mRNA, complete cds. 11/11 None
SNAP00000008286 ENSEMBL cdna:SNAP chromosome:CEL140:X:13584699:13589415:1 9/11 None
GENEFINDER00000008301 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13584699:13589415:1 11/11 None
F54B11.3a ENSEMBL cdna:known chromosome:CEL140:X:13584694:13589742:1 gene:F54B11.3 11/11 A 
F54B11.3b ENSEMBL cdna:known chromosome:CEL140:X:13584694:13588594:1 gene:F54B11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13584691-13588594(+) 100.0 100.0
Public Domain and Genome References
Ensembl F54B11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94142 Hypothetical protein F54B11.3a [Caenorhabditis elegans] ref|NP_001024707.1| UNCoordinated family member (unc-84) [Caenorhabditis elegans] gb|AAF15883.1| UNC-84A [Caenorhabditis elegans] sp|Q20745|UNC84_CAEEL Nuclear migration and anchoring protein unc-84 (Uncoordinated protein 84) 0.0
blast T22608 hypothetical protein F54B11.3 - Caenorhabditis elegans 0.0
blast CAC42306 Hypothetical protein F54B11.3b [Caenorhabditis elegans] ref|NP_001024708.1| UNCoordinated family member (unc-84) [Caenorhabditis elegans] gb|AAF15884.1| UNC-84B [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024707.1 7 117-134,138-157,390-412,508-530,678-700,715-737,757-779
NP_001024708.1 7 117-134,138-157,390-412,508-530,678-700,715-737,757-779
F54B11.3a 7 117-134,138-157,390-412,508-530,678-700,715-737,757-779
F54B11.3b 7 117-134,138-157,390-412,508-530,678-700,715-737,757-779
SNAP00000008286 5 117-134,138-157,390-412,478-500,513-532
GENEFINDER00000008301 7 117-134,138-157,390-412,508-530,690-712,727-749,769-791
Sequence
Target Sequence 
>C. ELEGANS:175675_S_AT
ctcttctcaagtcatttggcaccggaatcactaacattttttataacttcatttatgcac
caatcgctggagtgttcaactttgctggtgataactacatgtatttcttcaatgaggtag
cggcagtctttggaaaagtgtacaactccgtggtttccgtgctcaaaactgtaattaact
ggattctcttcctcattgcctacccattcagtttgtgcactcgtgcttggattcgcatca
gccaatatgctccagaagatgttgttcaagtgattccaattccacaagctattaccccaa
ctccggatgtggagcgtattgttgaagagccactgagaaaagtcaccgatgtggaggacg
aagaactagtgataattcccgcccccgcacctaaacctatcccagtcccagcgccaactc
cggccccagtaattatccatcagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTCTCAAGTCATTTGGCACCGG 50 229 2148 Antisense
TTGGCACCGGAATCACTAACATTTT 142 703 2163 Antisense
ATCGCTGGAGTGTTCAACTTTGCTG 37 37 2210 Antisense
TTAACTGGATTCTCTTCCTCATTGC 600 683 2322 Antisense
TTGCCTACCCATTCAGTTTGTGCAC 50 701 2343 Antisense
TGCACTCGTGCTTGGATTCGCATCA 581 577 2363 Antisense
GATTCGCATCAGCCAATATGCTCCA 5 433 2377 Antisense
TTCCAATTCCACAAGCTATTACCCC 517 697 2421 Antisense
TTACCCCAACTCCGGATGTGGAGCG 675 675 2439 Antisense
GAAGAACTAGTGATAATTCCCGCCC 283 339 2507 Antisense
CGGCCCCAGTAATTATCCATCAGAC 590 239 2568 Antisense
Sequence Source GenBank