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[175673_s_at]

Description g5739350 /REP_DB=GenBank Identifier /GB=AF167982.1 /PROTEIN_GB=AAD50438.1 /CHR=X /FEA=Mapped Transcript /DEF=dynamin
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 683
1 2 3 4 range
A 918.9
(3)
P 		573.6
(-0.2)
P 		632.1
(0.4)
P 		265.5
(-3)
P 		653
B 948.5
(3)
P 		625.4
(-0.4)
P 		559.3
(-1.1)
P 		372.2
(-3)
P 		576
C 779.8
(3)
P 		475.1
(-0.9)
P 		529.7
(-0.2)
P 		306.5
(-3)
P 		473
avr 882.4
(3) 		558
(-0.4) 		573.7
(-0.3) 		314.7
(-3) 		568

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 794
1 2 3 4 5 6 range
A 1080.8
(3)
P 		714.2
(0)
P 		454.5
(-2.1)
P 		346.7
(-2.9)
P 		407.6
(-2.5)
P 		339.9
(-3)
P 		741
B 918.9
(3)
P 		812.6
(1.9)
P 		360.5
(-2.8)
P 		457.7
(-1.8)
P 		343.3
(-3)
P 		359.9
(-2.8)
P 		576
C 894.5
(3)
P 		788.7
(2)
P 		469.3
(-1.2)
P 		418.9
(-1.7)
P 		402.7
(-1.9)
P 		286.7
(-3)
P 		608
avr 964.7
(3) 		771.8
(1.2) 		428.1
(-2.1) 		407.8
(-2.3) 		384.5
(-2.5) 		328.8
(-3) 		636
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 334.6
(3)
P 		124.5
(-1.3)
P 		165.2
(-0.4)
P 		38.9
(-3)
P 		296
B 302.5
(3)
P 		154.5
(-1)
P 		129.6
(-1.6)
P 		79.3
(-3)
P 		223
C 258.1
(3)
P 		136.6
(-0.5)
P 		184.6
(0.9)
P 		51.7
(-3)
P 		206
avr 298.4
(3) 		138.5
(-1) 		159.8
(-0.4) 		56.6
(-3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 199.2
(1.1)
P 		254
(3)
P 		99
(-2.4)
P 		87.9
(-2.8)
P 		123
(-1.6)
P 		82.8
(-3)
P 		171
B 319.7
(3)
P 		270.5
(1.7)
P 		87.5
(-3)
P 		121.2
(-2.1)
P 		139.5
(-1.7)
P 		134.2
(-1.8)
P 		232
C 331.6
(3)
P 		240.7
(0.8)
P 		119.4
(-2.1)
P 		84.2
(-3)
P 		130.3
(-1.9)
P 		96
(-2.7)
P 		247
avr 283.5
(3) 		255.1
(2.1) 		102
(-2.9) 		97.8
(-3) 		130.9
(-1.9) 		104.3
(-2.8) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175673_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20020
Sequence Type Exemplar sequence
Representative Public ID 5739350 NCBI
Target Description g5739350 /REP_DB=GenBank Identifier /GB=AF167982.1 /PROTEIN_GB=AAD50438.1 /CHR=X /FEA=Mapped Transcript /DEF=dynamin
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029160(11), NM_001029161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029160 NCBI Caenorhabditis elegans DYNamin related family member (dyn-1) (dyn-1) mRNA, complete cds. 11/11 None
NM_001029161 NCBI Caenorhabditis elegans DYNamin related family member (dyn-1) (dyn-1) mRNA, complete cds. 11/11 None
C02C6.1a ENSEMBL cdna:known chromosome:CEL140:X:15568834:15573611:1 gene:C02C6.1 11/11 A 
C02C6.1b ENSEMBL cdna:known chromosome:CEL140:X:15568834:15573611:1 gene:C02C6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15568833-15573611(+) 100.0 100.0
Public Domain and Genome References
Ensembl C02C6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42251 Hypothetical protein C02C6.1b [Caenorhabditis elegans] ref|NP_001024332.1| DYNamin related family member (dyn-1) [Caenorhabditis elegans] 0.0
blast CAB01857 Hypothetical protein C02C6.1a [Caenorhabditis elegans] ref|NP_001024331.1| DYNamin related family member (dyn-1) [Caenorhabditis elegans] sp|P39055|DYN1_CAEEL Dynamin 0.0
blast AAD50438 dynamin [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003130 EMBL-EBI Dynamin GTPase effector 2.4E-44
Pfam IPR000375 EMBL-EBI Dynamin central region 1.0E-126
Pfam IPR001401 EMBL-EBI Dynamin 1.0E-126
Pfam IPR001849 EMBL-EBI Pleckstrin-like 2.1E-16
Sequence
Target Sequence 
>C. ELEGANS:175673_S_AT
taatcaatatcccgagttcttccaccttttgagcaagtctcgttgaggattgcattggtc
ccagcgctaactaggcgtcaattcatccacctctccattctctctcccgttccaactgtg
tttttctttgtcagcggcgaattttccacaaccaatcgagtcctatttctctttttttcc
cccacctcccaataattttatttgcatgttttataaactcactttgttcaataatttatt
gattttattttttctatgatttgaaactttacatttttcctactcttctatagcaatact
ttgtcacttaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCAATATCCCGAGTTCTTCCAC 286 635 2650 Antisense
GTTCTTCCACCTTTTGAGCAAGTCT 296 443 2665 Antisense
TTGAGGATTGCATTGGTCCCAGCGC 452 703 2692 Antisense
GTCCCAGCGCTAACTAGGCGTCAAT 632 475 2707 Antisense
TAACTAGGCGTCAATTCATCCACCT 169 639 2717 Antisense
GTTCCAACTGTGTTTTTCTTTGTCA 47 439 2758 Antisense
TCTTTGTCAGCGGCGAATTTTCCAC 316 613 2774 Antisense
GAATTTTCCACAACCAATCGAGTCC 91 325 2788 Antisense
CCAATCGAGTCCTATTTCTCTTTTT 470 275 2801 Antisense
ACATTTTTCCTACTCTTCTATAGCA 22 105 2920 Antisense
CTATAGCAATACTTTGTCACTTACA 242 225 2937 Antisense
Sequence Source GenBank