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[175672_s_at]

Description g2911175 /REP_DB=GenBank Identifier /GB=AB011280.1 /PROTEIN_GB=BAA24960.1 /CHR=X /FEA=Mapped Transcript /DEF=GAP-2-4
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 30      6grp_total > 05      4grp_total > 46      6grp_cgc > 03      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 944
1 2 3 4 range
A 1204.9
(3)
P 		809.4
(-0.3)
P 		487.9
(-3)
P 		511.9
(-2.8)
P 		717
B 1432.3
(3)
P 		787.7
(-1.5)
P 		601.5
(-2.8)
P 		577.2
(-3)
P 		855
C 1348.2
(3)
P 		654.9
(-2.4)
P 		673.5
(-2.3)
P 		580.8
(-3)
P 		767
avr 1328.5
(3) 		750.7
(-1.5) 		587.6
(-2.8) 		556.6
(-3) 		772

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 769
1 2 3 4 5 6 range
A 1198.8
(3)
P 		963.6
(1.1)
P 		457.6
(-3)
P 		509.1
(-2.6)
P 		704.3
(-1)
P 		481.7
(-2.8)
P 		741
B 1215.3
(3)
P 		904.2
(0.3)
P 		557.1
(-2.7)
P 		665.9
(-1.7)
P 		640.3
(-1.9)
P 		518.2
(-3)
P 		697
C 965.1
(3)
P 		874.6
(2)
P 		569.5
(-1.6)
P 		446.7
(-3)
P 		730.2
(0.3)
P 		517.4
(-2.2)
P 		518
avr 1126.4
(3) 		914.1
(0.9) 		528.1
(-2.8) 		540.6
(-2.7) 		691.6
(-1.2) 		505.8
(-3) 		621
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 438.7
(3)
P 		175.7
(-1.3)
P 		127.6
(-2.1)
P 		74.9
(-3)
P 		364
B 456.8
(3)
P 		194.5
(-1.7)
P 		139.4
(-2.7)
P 		123
(-3)
P 		334
C 446.3
(3)
P 		188.3
(-1.4)
P 		234.7
(-0.6)
P 		97.9
(-3)
P 		348
avr 447.3
(3) 		186.2
(-1.5) 		167.2
(-1.8) 		98.6
(-3) 		349

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 221
(-0)
P 		342.7
(3)
P 		99.7
(-3)
P 		129.1
(-2.3)
P 		212.5
(-0.2)
P 		117.3
(-2.6)
P 		243
B 422.9
(3)
P 		301
(0.5)
P 		135.3
(-3)
P 		176.4
(-2.1)
P 		260.1
(-0.4)
P 		193.2
(-1.8)
P 		288
C 357.7
(3)
P 		266.9
(1)
P 		144.9
(-1.8)
P 		89.8
(-3)
P 		236.3
(0.3)
P 		173.2
(-1.1)
P 		268
avr 333.9
(3) 		303.5
(2.1) 		126.6
(-3) 		131.8
(-2.8) 		236.3
(0.2) 		161.2
(-2) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175672_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19964
Sequence Type Exemplar sequence
Representative Public ID 2911175 NCBI
Target Description g2911175 /REP_DB=GenBank Identifier /GB=AB011280.1 /PROTEIN_GB=BAA24960.1 /CHR=X /FEA=Mapped Transcript /DEF=GAP-2-4
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077193(11), NM_077195(11), NM_077196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077193 NCBI Caenorhabditis elegans GTPase Activating Protein family member (gap-2) (gap-2) mRNA, complete cds. 11/11 A 
NM_077195 NCBI Caenorhabditis elegans GTPase Activating Protein family member (gap-2) (gap-2) mRNA, complete cds. 11/11 None
NM_077196 NCBI Caenorhabditis elegans GTPase Activating Protein family member (gap-2) (gap-2) mRNA, complete cds. 11/11 None
ZK899.8a ENSEMBL cdna:known chromosome:CEL140:X:9472399:9516374:1 gene:ZK899.8 11/11 A 
ZK899.8c ENSEMBL cdna:known chromosome:CEL140:X:9478939:9516372:1 gene:ZK899.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181172 8 3 NM_077193 175671_at (11), 175672_s_at (11)
NM_077195 175671_at (11), 175672_s_at (11)
NM_077196 175671_at (11), 175672_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9480577-9516372(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK899.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86416 Hypothetical protein ZK899.8a [Caenorhabditis elegans] emb|CAA86034.1| Hypothetical protein ZK899.8a [Caenorhabditis elegans] emb|CAA85503.1| Hypothetical protein ZK899.8a [Caenorhabditis elegans] ref|NP_509594.3| GTPase Activating Protein family member (gap-2) [Caenorhabditis elegans] sp|Q8MLZ5|GAP2_CAEEL Ras GTPase-activating protein gap-2 (GTPase-activating protein 2) 0.0
blast CAA86417 Hypothetical protein ZK899.8b [Caenorhabditis elegans] emb|CAA86035.1| Hypothetical protein ZK899.8b [Caenorhabditis elegans] ref|NP_509595.1| GTPase Activating Protein family member (gap-2) [Caenorhabditis elegans] 0.0
blast CAA86419 Hypothetical protein ZK899.8e [Caenorhabditis elegans] emb|CAA86037.1| Hypothetical protein ZK899.8e [Caenorhabditis elegans] ref|NP_509598.1| GTPase Activating Protein family member (gap-2) [Caenorhabditis elegans] 0.0
blast CAA86415 Hypothetical protein ZK899.8c [Caenorhabditis elegans] emb|CAA86033.1| Hypothetical protein ZK899.8c [Caenorhabditis elegans] ref|NP_509596.1| GTPase Activating Protein family member (gap-2) [Caenorhabditis elegans] 0.0
blast CAA86418 Hypothetical protein ZK899.8d [Caenorhabditis elegans] emb|CAA86036.1| Hypothetical protein ZK899.8d [Caenorhabditis elegans] ref|NP_509597.1| GTPase Activating Protein family member (gap-2) [Caenorhabditis elegans] 0.0
blast BAA24960.1 GAP-2-4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 1.4E-7
Pfam IPR001936 EMBL-EBI Ras GTPase-activating protein 6.9E-49
Pfam IPR000008 EMBL-EBI C2 domain 1.4E-7
Pfam IPR001936 EMBL-EBI Ras GTPase-activating protein 6.9E-49
Pfam IPR000008 EMBL-EBI C2 domain 1.4E-7
Pfam IPR001936 EMBL-EBI Ras GTPase-activating protein 6.9E-49
Sequence
Target Sequence 
>C. ELEGANS:175672_S_AT
atctaaaggcttttcatgcatattttgaatatctaaagttctcctgctcacctgtcattt
tttgtagtttagagggtttttgattgtgattttttaattttcaatatatgtcttcttccc
tccactacccatcttccgatgtacaacaacgtaaactttgtcgcactgcttgttttttag
ctccatacactggagatatgaaaactacccggtagcggtgttgttagccaacctctttga
tgctttacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTAAAGGCTTTTCATGCATATTT 54 31 3647 Antisense
GAATATCTAAAGTTCTCCTGCTCAC 7 327 3673 Antisense
GTAGTTTAGAGGGTTTTTGATTGTG 144 457 3710 Antisense
TTTTCAATATATGTCTTCTTCCCTC 5 677 3744 Antisense
ACTACCCATCTTCCGATGTACAACA 299 101 3770 Antisense
AACGTAAACTTTGTCGCACTGCTTG 281 113 3794 Antisense
GTCGCACTGCTTGTTTTTTAGCTCC 296 475 3806 Antisense
GCTTGTTTTTTAGCTCCATACACTG 410 305 3814 Antisense
GGAGATATGAAAACTACCCGGTAGC 16 517 3838 Antisense
GGTAGCGGTGTTGTTAGCCAACCTC 42 503 3857 Antisense
AGCCAACCTCTTTGATGCTTTACAC 622 83 3872 Antisense
Sequence Source GenBank