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[175671_at]

Description g2911175 /REP_DB=GenBank Identifier /GB=AB011280.1 /PROTEIN_GB=BAA24960.1 /CHR=X /FEA=Mapped Transcript /DEF=GAP-2-4
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 70      6grp_total > 16      4grp_total > 52      6grp_highest_sub > Cu      6grp_cgc > 03      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 425
1 2 3 4 range
A 384.1
(3)
P 		272.8
(-0.2)
P 		238.7
(-1.2)
P 		176
(-3)
P 		208
B 271.1
(-1.6)
P 		595.1
(3)
P 		199.3
(-2.6)
P 		170.4
(-3)
P 		425
C 442.2
(3)
P 		377.6
(1.4)
P 		403.3
(2)
P 		198
(-3)
P 		244
avr 365.8
(1.7) 		415.2
(3) 		280.4
(-0.5) 		181.5
(-3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 553
1 2 3 4 5 6 range
A 342.8
(1.1)
P 		451.9
(3)
P 		201.7
(-1.4)
P 		110
(-3)
P 		200.4
(-1.4)
P 		150.7
(-2.3)
P 		342
B 543.6
(3)
P 		367.3
(-0.1)
P 		242.5
(-2.2)
P 		198.8
(-3)
P 		273.2
(-1.7)
P 		268.7
(-1.8)
P 		345
C 662.7
(3)
P 		324.3
(-1.1)
P 		224.4
(-2.3)
P 		170.9
(-3)
P 		396
(-0.3)
P 		277.7
(-1.7)
P 		492
avr 516.4
(3) 		381.2
(0.7) 		222.9
(-1.9) 		159.9
(-3) 		289.9
(-0.8) 		232.4
(-1.8) 		357
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 139.9
(3)
P 		59.2
(-1.2)
P 		62.4
(-1.1)
P 		25.8
(-3)
P 		114
B 86.5
(-0.3)
P 		147
(3)
P 		46.2
(-2.5)
P 		36.3
(-3)
P 		111
C 146.4
(3)
P 		108.6
(1)
P 		140.6
(2.7)
P 		33.4
(-3)
P 		113
avr 124.3
(3) 		104.9
(1.7) 		83.1
(0.3) 		31.8
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 63.2
(-1.4)
P 		160.7
(3)
P 		43.9
(-2.3)
P 		27.9
(-3)
P 		60.5
(-1.5)
P 		36.7
(-2.6)
P 		133
B 189.2
(3)
P 		122.3
(0.1)
P 		58.9
(-2.7)
P 		52.7
(-3)
P 		111
(-0.4)
P 		100.2
(-0.9)
P 		137
C 245.6
(3)
P 		99
(-1.2)
P 		57.1
(-2.4)
P 		34.4
(-3)
P 		128.2
(-0.3)
P 		93
(-1.3)
P 		211
avr 166
(3) 		127.3
(1.2) 		53.3
(-2.3) 		38.3
(-3) 		99.9
(-0.1) 		76.6
(-1.2) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175671_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19964
Sequence Type Exemplar sequence
Representative Public ID 2911175 NCBI
Target Description g2911175 /REP_DB=GenBank Identifier /GB=AB011280.1 /PROTEIN_GB=BAA24960.1 /CHR=X /FEA=Mapped Transcript /DEF=GAP-2-4
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077193(11), NM_077195(11), NM_077196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077193 NCBI Caenorhabditis elegans GTPase Activating Protein family member (gap-2) (gap-2) mRNA, complete cds. 11/11 A 
NM_077195 NCBI Caenorhabditis elegans GTPase Activating Protein family member (gap-2) (gap-2) mRNA, complete cds. 11/11 None
NM_077196 NCBI Caenorhabditis elegans GTPase Activating Protein family member (gap-2) (gap-2) mRNA, complete cds. 11/11 None
ZK899.8a ENSEMBL cdna:known chromosome:CEL140:X:9472399:9516374:1 gene:ZK899.8 11/11 A 
ZK899.8c ENSEMBL cdna:known chromosome:CEL140:X:9478939:9516372:1 gene:ZK899.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181172 8 3 NM_077193 175671_at (11), 175672_s_at (11)
NM_077195 175671_at (11), 175672_s_at (11)
NM_077196 175671_at (11), 175672_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9480577-9516372(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK899.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86416 Hypothetical protein ZK899.8a [Caenorhabditis elegans] emb|CAA86034.1| Hypothetical protein ZK899.8a [Caenorhabditis elegans] emb|CAA85503.1| Hypothetical protein ZK899.8a [Caenorhabditis elegans] ref|NP_509594.3| GTPase Activating Protein family member (gap-2) [Caenorhabditis elegans] sp|Q8MLZ5|GAP2_CAEEL Ras GTPase-activating protein gap-2 (GTPase-activating protein 2) 0.0
blast CAA86417 Hypothetical protein ZK899.8b [Caenorhabditis elegans] emb|CAA86035.1| Hypothetical protein ZK899.8b [Caenorhabditis elegans] ref|NP_509595.1| GTPase Activating Protein family member (gap-2) [Caenorhabditis elegans] 0.0
blast CAA86419 Hypothetical protein ZK899.8e [Caenorhabditis elegans] emb|CAA86037.1| Hypothetical protein ZK899.8e [Caenorhabditis elegans] ref|NP_509598.1| GTPase Activating Protein family member (gap-2) [Caenorhabditis elegans] 0.0
blast CAA86415 Hypothetical protein ZK899.8c [Caenorhabditis elegans] emb|CAA86033.1| Hypothetical protein ZK899.8c [Caenorhabditis elegans] ref|NP_509596.1| GTPase Activating Protein family member (gap-2) [Caenorhabditis elegans] 0.0
blast CAA86418 Hypothetical protein ZK899.8d [Caenorhabditis elegans] emb|CAA86036.1| Hypothetical protein ZK899.8d [Caenorhabditis elegans] ref|NP_509597.1| GTPase Activating Protein family member (gap-2) [Caenorhabditis elegans] 0.0
blast BAA24960.1 GAP-2-4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 1.4E-7
Pfam IPR001936 EMBL-EBI Ras GTPase-activating protein 6.9E-49
Pfam IPR000008 EMBL-EBI C2 domain 1.4E-7
Pfam IPR001936 EMBL-EBI Ras GTPase-activating protein 6.9E-49
Pfam IPR000008 EMBL-EBI C2 domain 1.4E-7
Pfam IPR001936 EMBL-EBI Ras GTPase-activating protein 6.9E-49
Sequence
Target Sequence 
>C. ELEGANS:175671_AT
attatcctacagttattagtcttattattattttacctatttatttttatcgatctattg
gttcttcttgtcttaatgtaactaatgatgttcccaaagaaataaaagtacatatactgt
cttcccctgcactcccgttggtctcttcatttgcctgccgccaacctttcgattcagtac
acatcccttatctaaaggcttttcatgcatattttgaatatctaaagttctcctgctcac
ctgtcattttttgtagtttagagggtttttgattgtgattttttaattttcaatatatgt
cttcttccctccactacccatcttccgatgtacaacaacgtaaactttgtcgcactgctt
gttttttagctccatacactggagatatgaaaactacccggtagcggtgttgttagccaa
cctctttgatgctttacacatttaattgttaaatatgtgagaatcttttatctattgaac
acacatttattattggcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATCCTACAGTTATTAGTCTTAT 144 11 3458 Antisense
TAGTCTTATTATTATTTTACCTATT 487 653 3474 Antisense
TTACCTATTTATTTTTATCGATCTA 81 681 3490 Antisense
ATCGATCTATTGGTTCTTCTTGTCT 231 37 3506 Antisense
GGTTCTTCTTGTCTTAATGTAACTA 90 507 3517 Antisense
ATGTAACTAATGATGTTCCCAAAGA 570 47 3533 Antisense
AAAGTACATATACTGTCTTCCCCTG 534 121 3562 Antisense
GCCAACCTTTCGATTCAGTACACAT 176 277 3617 Antisense
ATTCAGTACACATCCCTTATCTAAA 138 11 3629 Antisense
TATGTGAGAATCTTTTATCTATTGA 421 655 3911 Antisense
TGAACACACATTTATTATTGGCATA 338 573 3933 Antisense
Sequence Source GenBank