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[175670_s_at] Cyclins

Description g3582734 /REP_DB=GenBank Identifier /GB=AF053067.1 /PROTEIN_GB=AAC35273.1 /CHR=2 /FEA=Mapped Transcript /DEF=cyclin D
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 80      6grp_total > 16      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 250.8
(3)
P 		208.2
(0.8)
P 		185.9
(-0.3)
P 		133.6
(-3)
P 		117
B 206
(2.5)
P 		210.1
(3)
P 		189.8
(0.7)
P 		158.2
(-3)
P 		52
C 200.4
(1.5)
P 		237.5
(3)
P 		163.7
(0.1)
P 		84.9
(-3)
P 		153
avr 219.1
(3) 		218.6
(3) 		179.8
(0.5) 		125.6
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 310.2
(3)
P 		252.2
(1.4)
P 		172.4
(-0.9)
P 		101.5
(-2.9)
P 		98.1
(-3)
P 		174.3
(-0.8)
P 		212
B 293.9
(3)
P 		238.1
(1.5)
P 		94.3
(-2.2)
P 		111.1
(-1.8)
P 		64.7
(-3)
P 		117.4
(-1.6)
P 		229
C 333.9
(3)
P 		209.2
(0.2)
P 		117.3
(-1.8)
P 		124.1
(-1.7)
P 		102.7
(-2.1)
P 		64
(-3)
P 		270
avr 312.7
(3) 		233.2
(0.9) 		128
(-1.9) 		112.2
(-2.4) 		88.5
(-3) 		118.6
(-2.2) 		224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 91.3
(3)
P 		45.2
(-0.9)
P 		48.6
(-0.6)
P 		19.6
(-3)
P 		72
B 65.7
(3)
P 		51.9
(0.4)
P 		44
(-1.1)
P 		33.7
(-3)
P 		32
C 66.3
(2.8)
P 		68.3
(3)
P 		57.1
(1.8)
P 		14.3
(-3)
P 		54
avr 74.4
(3) 		55.1
(0.8) 		49.9
(0.2) 		22.5
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 57.2
(-0)
P 		89.7
(3)
P 		37.5
(-1.9)
P 		25.7
(-3)
P 		29.6
(-2.6)
P 		42.4
(-1.4)
P 		64
B 102.3
(3)
P 		79.3
(1.3)
P 		22.9
(-3)
P 		29.4
(-2.5)
P 		26.3
(-2.7)
P 		43.8
(-1.4)
P 		79
C 123.8
(3)
P 		63.8
(-0.5)
P 		29.9
(-2.5)
P 		25
(-2.8)
P 		33.2
(-2.3)
P 		21.4
(-3)
P 		102
avr 94.4
(3) 		77.6
(1.5) 		30.1
(-2.7) 		26.7
(-3) 		29.7
(-2.7) 		35.9
(-2.2) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175670_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19701
Sequence Type Exemplar sequence
Representative Public ID 3582734 NCBI
Target Description g3582734 /REP_DB=GenBank Identifier /GB=AF053067.1 /PROTEIN_GB=AAC35273.1 /CHR=2 /FEA=Mapped Transcript /DEF=cyclin D
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064362 NCBI Caenorhabditis elegans Y38F1A.5 (Cyclins) mRNA, complete cds. 11/11 A 
Y38F1A.5.2 ENSEMBL cdna:known chromosome:CEL140:II:12980488:12993015:1 gene:Y38F1A.5 11/11 A 
Y38F1A.5.1 ENSEMBL cdna:known chromosome:CEL140:II:12988119:12993015:1 gene:Y38F1A.5 11/11 A 
Y38F1A.5.3 ENSEMBL cdna:known chromosome:CEL140:II:12988120:12993015:1 gene:Y38F1A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12988114-12992735(+) 95.09 100.0
Public Domain and Genome References
Gene Title Cyclins
Gene Symbol cyd-1
Ensembl Y38F1A.5
Entrez Gene 174941 Entrez gene
SwissProt Q9U2M5 EMBL-EBI
WormBase CE21610 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.21188.1.S1_S_AT similar to G1/S-specific cyclin D2 cfa
DROSOPHILA_2:1627295_S_AT Cyclin D dm
DROSGENOME1:154137_AT Cyclin D dm
CHICKEN:GGA.3974.1.S1_AT cyclin D2 gga
CHICKEN:GGA.3974.1.S2_AT cyclin D2 gga
HG-U133_PLUS_2:200951_S_AT cyclin D2 hs
HG-U133A_2:200951_S_AT cyclin D2 hs
HG-U133A:200951_S_AT cyclin D2 hs
HG-U133_PLUS_2:200952_S_AT cyclin D2 hs
HG-U133A_2:200952_S_AT cyclin D2 hs
HG-U133A:200952_S_AT cyclin D2 hs
HG-U95AV2:1983_AT cyclin D2 hs
HC-G110:1983_AT cyclin D2 hs
HG-U133A:200953_S_AT cyclin D2 hs
HG-U133_PLUS_2:200953_S_AT cyclin D2 hs
HG-FOCUS:200953_S_AT cyclin D2 hs
HG-U133A_2:200953_S_AT cyclin D2 hs
HUGENEFL:D13639_AT cyclin D2 hs
U133_X3P:G4502616_3P_A_AT cyclin D2 hs
U133_X3P:HS.75586.0.A3_3P_A_AT cyclin D2 hs
U133_X3P:HS.75586.0.A1_3P_A_AT cyclin D2 hs
HG-U95AV2:36650_AT cyclin D2 hs
HG-U95E:73313_AT cyclin D2 hs
HG-U95E:73316_AT cyclin D2 hs
HG-U95D:84881_AT cyclin D2 hs
U133_X3P:HS2.376071.1.S1_3P_AT Cyclin D2 hs
HG-U133_PLUS_2:1565735_AT Cyclin D2 hs
HG-U133_PLUS_2:1565734_AT Cyclin D2 hs
HG-U133_PLUS_2:231259_S_AT Cyclin D2 hs
HG-U133B:231259_S_AT Cyclin D2 hs
U133_X3P:HS.75586.1.A1_3P_AT Cyclin D2 hs
MOE430A:1455956_X_AT cyclin D2 mm
MOUSE430A_2:1455956_X_AT cyclin D2 mm
MOUSE430_2:1455956_X_AT cyclin D2 mm
MU11KSUBA:M83749_S_AT cyclin D2 mm
MU11KSUBB:MSA.17902.0_S_AT cyclin D2 mm
MU11KSUBB:MSA.15616.0_S_AT cyclin D2 mm
MU11KSUBB:MSA.25099.0_S_AT cyclin D2 mm
MG-U74AV2:97504_AT cyclin D2 mm
MOE430A:1434745_AT cyclin D2 mm
MOUSE430A_2:1434745_AT cyclin D2 mm
MOUSE430_2:1434745_AT cyclin D2 mm
MOE430A:1430127_A_AT cyclin D2 mm
MOUSE430A_2:1430127_A_AT cyclin D2 mm
MOUSE430_2:1430127_A_AT cyclin D2 mm
MOE430A:1416122_AT cyclin D2 mm
MOUSE430A_2:1416122_AT cyclin D2 mm
MOUSE430_2:1416122_AT cyclin D2 mm
MOE430A:1448229_S_AT cyclin D2 mm
MOUSE430A_2:1448229_S_AT cyclin D2 mm
MOUSE430_2:1448229_S_AT cyclin D2 mm
MOE430A:1416123_AT cyclin D2 mm
MOUSE430A_2:1416123_AT cyclin D2 mm
MOUSE430_2:1416123_AT cyclin D2 mm
MOE430A:1416124_AT cyclin D2 mm
MOUSE430A_2:1416124_AT cyclin D2 mm
MOUSE430_2:1416124_AT cyclin D2 mm
MU19KSUBA:TC14569_F_AT Cyclin D2 (Ccnd2), mRNA mm
MU19KSUBA:TC15584_AT Cyclin D2 (Ccnd2), mRNA mm
MU19KSUBA:TC20139_AT Cyclin D2 (Ccnd2), mRNA mm
MU19KSUBA:TC20139_G_AT Cyclin D2 (Ccnd2), mRNA mm
MU19KSUBB:TC30362_AT Cyclin D2 (Ccnd2), mRNA mm
RT-U34:D16308_AT cyclin D2 rn
RG-U34A:D16308_AT cyclin D2 rn
RG-U34A:RC_AA899106_AT cyclin D2 rn
RAE230A:1370810_AT cyclin D2 rn
RAT230_2:1370810_AT cyclin D2 rn
RAE230B:1392374_AT Cyclin D2 rn
RAT230_2:1392374_AT Cyclin D2 rn
Protein Similarities
Method ID Description E-Value
blast CAA21630 Hypothetical protein Y38F1A.5 [Caenorhabditis elegans] ref|NP_496763.1| Y38F1A.5 [Caenorhabditis elegans] 0.0
blast AAC35273 cyclin D [Caenorhabditis elegans] 0.0
blast AAM78550 G1 cyclin CYD-1 [Caenorhabditis briggsae] emb|CAE59404.1| Hypothetical protein CBG02768 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 2.9E-39
Sequence
Target Sequence 
>C. ELEGANS:175670_S_AT
tgaacatttgttacccattattttatgcattgtttagcttctatgtcgattcgaaaccaa
atcccaaaaaatctcaaaacacatccagtcttccattttctatgtagcttttgcattatt
tcctaaactttaatttttaaaccggtgttcccaacaaatcttccagtttattattcttat
tattctgaaaaaaataatatatatatatattaaaacatttattctaagttatttccacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACATTTGTTACCCATTATTTTA 407 571 1230 Antisense
GTTACCCATTATTTTATGCATTGTT 258 447 1239 Antisense
GCATTGTTTAGCTTCTATGTCGATT 538 307 1256 Antisense
TGTCGATTCGAAACCAAATCCCAAA 25 555 1273 Antisense
ATCTCAAAACACATCCAGTCTTCCA 260 33 1300 Antisense
CATCCAGTCTTCCATTTTCTATGTA 408 211 1311 Antisense
GTCTTCCATTTTCTATGTAGCTTTT 475 465 1317 Antisense
GTAGCTTTTGCATTATTTCCTAAAC 573 457 1333 Antisense
TGTTCCCAACAAATCTTCCAGTTTA 481 559 1375 Antisense
AATCTTCCAGTTTATTATTCTTATT 166 171 1386 Antisense
CATTTATTCTAAGTTATTTCCACCT 433 215 1445 Antisense
Sequence Source GenBank