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[175669_at]

Description g459698 /REP_DB=GenBank Identifier /GB=L29438.1 /PROTEIN_GB=AAA98750.1 /CHR=1 /FEA=Mapped Transcript /DEF=endoprotease
Cluster 6grp_total > 78      4grp_total > 41      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 34
(-3)
A 		128.9
(3)
P 		115.2
(2.1)
P 		87.1
(0.4)
A 		95
B 55.3
(-3)
A 		140.6
(2)
P 		157.8
(3)
P 		78.1
(-1.7)
A 		103
C 64.1
(-3)
A 		139.7
(3)
P 		91.7
(-0.8)
P 		117.7
(1.3)
A 		76
avr 51.1
(-3) 		136.4
(3) 		121.6
(2) 		94.3
(0) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 97.2
(-2.4)
A 		61
(-2.9)
A 		56
(-3)
A 		77.5
(-2.7)
P 		283.9
(0.5)
P 		449.4
(3)
P 		393
B 94.6
(-2.5)
P 		69.3
(-2.9)
A 		59.9
(-3)
A 		94.4
(-2.5)
P 		169.4
(-1.3)
P 		445.5
(3)
P 		386
C 88.6
(-2.5)
A 		48.4
(-3)
A 		79.4
(-2.6)
A 		158.3
(-1.6)
P 		205.2
(-1)
P 		523.1
(3)
P 		475
avr 93.5
(-2.5) 		59.6
(-3) 		65.1
(-2.9) 		110.1
(-2.3) 		219.5
(-0.7) 		472.7
(3) 		413
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 12.4
(-3)
A 		28
(2.3)
P 		30.1
(3)
P 		12.7
(-2.9)
A 		18
B 17.6
(-2.7)
A 		34.7
(2.4)
P 		36.6
(3)
P 		16.6
(-3)
A 		20
C 21.2
(-2.6)
A 		40.2
(3)
P 		32
(0.6)
P 		19.8
(-3)
A 		20
avr 17.1
(-2.8) 		34.3
(3) 		32.9
(2.5) 		16.4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 17.9
(-2.6)
A 		21.7
(-2.4)
A 		12.2
(-3)
A 		19.7
(-2.5)
P 		85.7
(1.5)
P 		109.4
(3)
P 		97
B 32.9
(-2.3)
P 		23.1
(-2.7)
A 		14.6
(-3)
A 		25
(-2.6)
P 		68.8
(-0.9)
P 		166.1
(3)
P 		152
C 32.8
(-2.3)
A 		14.8
(-3)
A 		20.2
(-2.8)
A 		31.8
(-2.4)
P 		66.4
(-1.1)
P 		175.1
(3)
P 		160
avr 27.9
(-2.5) 		19.9
(-2.8) 		15.7
(-3) 		25.5
(-2.6) 		73.6
(-0.4) 		150.2
(3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19655
Sequence Type Exemplar sequence
Representative Public ID 459698 NCBI
Target Description g459698 /REP_DB=GenBank Identifier /GB=L29438.1 /PROTEIN_GB=AAA98750.1 /CHR=1 /FEA=Mapped Transcript /DEF=endoprotease
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026369 NCBI Caenorhabditis elegans K04F10.4a (endoprotease) mRNA, complete cds. 11/11 None
K04F10.4a.1 ENSEMBL cdna:known chromosome:CEL140:I:6350366:6356621:1 gene:K04F10.4 11/11 A 
K04F10.4a.2 ENSEMBL cdna:known chromosome:CEL140:I:6350366:6356599:1 gene:K04F10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172333 6 1 NM_001026369 175669_at (11)
NM_001026370 175666_s_at (11)
NM_001026371 191107_s_at (11)
NM_001026372 172006_x_at (11), 191062_s_at (11), 191107_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6350494-6356550(+) 100.0 100.0
Public Domain and Genome References
Ensembl K04F10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96753 Blistered cuticle protein 4, isoform a [Caenorhabditis elegans] ref|NP_001021540.1| K04F10.4a [Caenorhabditis elegans] 0.0
blast AAO12410 Blistered cuticle protein 4, isoform f [Caenorhabditis elegans] ref|NP_001021545.1| K04F10.4f [Caenorhabditis elegans] 0.0
blast AAB96754 Blistered cuticle protein 4, isoform d [Caenorhabditis elegans] ref|NP_001021543.1| K04F10.4d [Caenorhabditis elegans] pir||D87803 protein bli-4D [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002884 EMBL-EBI Peptidase S8B, proprotein convertase, P domain 2.9E-70
Pfam IPR000209 EMBL-EBI Peptidase S8 and S53, subtilisin, kexin, sedolisin 2.2E-113
Sequence
Target Sequence 
>C. ELEGANS:175669_AT
gtcgtcaacgcatgaattattttctgtttcactgctcacagcttcatagagcttaaaatt
agatttattgtccctttatccttggttacgatgtgttctgaaacttgtctcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGTCAACGCATGAATTATTTTCT 491 473 2016 Antisense
AATTATTTTCTGTTTCACTGCTCAC 460 175 2030 Antisense
ATTTTCTGTTTCACTGCTCACAGCT 212 15 2034 Antisense
GTTTCACTGCTCACAGCTTCATAGA 529 449 2041 Antisense
CACTGCTCACAGCTTCATAGAGCTT 557 197 2045 Antisense
TGCTCACAGCTTCATAGAGCTTAAA 340 581 2048 Antisense
ATTAGATTTATTGTCCCTTTATCCT 133 13 2073 Antisense
AGATTTATTGTCCCTTTATCCTTGG 384 65 2076 Antisense
GTCCCTTTATCCTTGGTTACGATGT 553 475 2085 Antisense
TTTATCCTTGGTTACGATGTGTTCT 197 675 2090 Antisense
GATGTGTTCTGAAACTTGTCTCCCC 293 409 2105 Antisense
Sequence Source GenBank