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[175668_s_at]

Description g9965902 /REP_DB=GenBank Identifier /GB=AF288812.1 /PROTEIN_GB=AAG10199.1 /CHR=4 /FEA=Mapped Transcript /DEF=synembryn
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 59      4grp_high_8_8 > 26      6grp_highest_nonorm > 80      6grp_total > 26      4grp_total > 38      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 496.6
(3)
P 		180.5
(-1.9)
P 		110.1
(-3)
P 		446.7
(2.2)
P 		387
B 489
(3)
P 		266.7
(-0.8)
P 		151.9
(-2.8)
P 		141.4
(-3)
P 		348
C 379
(3)
P 		341.4
(2)
P 		202.5
(-1.5)
P 		145.1
(-3)
P 		234
avr 454.9
(3) 		262.9
(-0.8) 		154.8
(-3) 		244.4
(-1.2) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 376.5
(3)
P 		240.7
(-1.3)
P 		185.5
(-3)
P 		229.5
(-1.6)
P 		194.8
(-2.7)
P 		210.8
(-2.2)
P 		191
B 228.6
(-0.1)
P 		277.8
(1.5)
P 		135.3
(-3)
P 		185.9
(-1.4)
P 		200
(-1)
P 		327.1
(3)
P 		192
C 380
(2.5)
P 		399.7
(3)
P 		156.7
(-2.6)
P 		140.4
(-3)
P 		199.1
(-1.6)
P 		183.8
(-2)
P 		259
avr 328.4
(3) 		306.1
(2.2) 		159.2
(-3) 		185.3
(-2.1) 		198
(-1.6) 		240.6
(-0.1) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 180.8
(3)
P 		39.2
(-2.6)
P 		28.8
(-3)
P 		65.4
(-1.6)
P 		152
B 155.9
(3)
P 		65.9
(-1.3)
P 		35.2
(-2.8)
P 		30.1
(-3)
P 		126
C 125.5
(3)
P 		98.1
(1.4)
P 		70.6
(-0.3)
P 		24.5
(-3)
P 		101
avr 154.1
(3) 		67.7
(-1.5) 		44.9
(-2.7) 		40
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 69.4
(0.8)
P 		85.6
(3)
P 		40.4
(-3)
P 		58.2
(-0.6)
P 		58.8
(-0.6)
P 		51.3
(-1.6)
P 		45
B 79.5
(0.1)
P 		92.5
(1)
P 		32.9
(-3)
P 		49.2
(-1.9)
P 		81.3
(0.3)
P 		122
(3)
P 		89
C 140.8
(3)
P 		122
(2)
P 		39.9
(-2.4)
P 		28.2
(-3)
P 		64.4
(-1.1)
P 		61.5
(-1.2)
P 		113
avr 96.6
(2.7) 		100
(3) 		37.7
(-3) 		45.2
(-2.3) 		68.2
(-0.1) 		78.3
(0.9) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175668_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19880
Sequence Type Exemplar sequence
Representative Public ID 9965902 NCBI
Target Description g9965902 /REP_DB=GenBank Identifier /GB=AF288812.1 /PROTEIN_GB=AAG10199.1 /CHR=4 /FEA=Mapped Transcript /DEF=synembryn
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028390(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028390 NCBI Caenorhabditis elegans Resistance to Inhibitors of Cholinesterase family member (ric-8) (ric-8) mRNA, complete cds. 11/11 None
Y69A2AR.2a ENSEMBL cdna:known chromosome:CEL140:IV:2642976:2650103:1 gene:Y69A2AR.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177048 2 1 NM_001028390 175668_s_at (11), 176565_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2642981-2650107(+) 99.0 100.0
Public Domain and Genome References
Ensembl Y69A2AR.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68564 Resistance to inhibitors of cholinesterase protein 8, isoform a [Caenorhabditis elegans] ref|NP_001023561.1| Resistance to Inhibitors of Cholinesterase family member (ric-8) [Caenorhabditis elegans] gb|AAG10199.1| synembryn [Caenorhabditis elegans] 0.0
blast CAE68210 Hypothetical protein CBG13878 [Caenorhabditis briggsae] 0.0
blast AAP31421 Resistance to inhibitors of cholinesterase protein 8, isoform b [Caenorhabditis elegans] ref|NP_001023562.1| Resistance to Inhibitors of Cholinesterase family member (ric-8) [Caenorhabditis elegans] 1.0E-54
Sequence
Target Sequence 
>C. ELEGANS:175668_S_AT
ctatttttatcttataacacactacaaaatattgttcaaattttccctcacagaaatttt
caaaaaatttctcaaaaagtgcctaaaatcctgaaatttccccctttttgtctaaaaatt
cactaaaatcttatgaattttccacacaaaaaaaagtggaatttttgtatcaattttacc
atctgaatttgagaaattacattcaaaaatacacaaaaacaatttccaaattttccacat
ttttcgttgaaaacattttttacccaaaaatccctcaaattttgaattattcaaaagttt
ttcctgacaaaatccccatttttattgtattttcccccctcaaaacccccaaaaatggtc
taaaaatcacaattttcaatgtgtatattcccctttatttcagatctctcaacgcaaaat
atgccaatttccaaagctttacccctttttttagtcaacttacagaagttctcaatctat
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATTTTTATCTTATAACACACTAC 355 223 1808 Antisense
TATTGTTCAAATTTTCCCTCACAGA 598 665 1837 Antisense
CAAAAAGTGCCTAAAATCCTGAAAT 169 191 1880 Antisense
AAATCTTATGAATTTTCCACACAAA 50 119 1933 Antisense
TTTTGTATCAATTTTACCATCTGAA 512 677 1970 Antisense
TTCCTGACAAAATCCCCATTTTTAT 130 655 2108 Antisense
ATTTTCAATGTGTATATTCCCCTTT 263 15 2179 Antisense
ATATTCCCCTTTATTTCAGATCTCT 142 19 2192 Antisense
TCAGATCTCTCAACGCAAAATATGC 520 623 2207 Antisense
TATGCCAATTTCCAAAGCTTTACCC 584 657 2227 Antisense
AACTTACAGAAGTTCTCAATCTATT 502 139 2264 Antisense
Sequence Source GenBank