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[175667_at]

Description g404681 /REP_DB=GenBank Identifier /GB=L23110.1 /PROTEIN_GB=AAA03544.1 /CHR=3 /FEA=Mapped Transcript /DEF=BMP receptor
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 21      6grp_total > 13      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 41      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 765
1 2 3 4 range
A 1666.1
(3)
P 		1243.1
(-0.6)
P 		964.8
(-3)
P 		1059.9
(-2.2)
P 		701
B 1664.4
(3)
P 		1409.6
(1)
P 		900.8
(-3)
P 		1358.4
(0.6)
P 		764
C 1508.9
(3)
P 		1002.4
(-2)
P 		900.7
(-3)
P 		1179.5
(-0.2)
P 		608
avr 1613.1
(3) 		1218.4
(-0.4) 		922.1
(-3) 		1199.3
(-0.6) 		691

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1184
1 2 3 4 5 6 range
A 1667.6
(3)
P 		1502.1
(1.9)
P 		780
(-2.9)
P 		816.1
(-2.7)
P 		1119.2
(-0.6)
P 		766.1
(-3)
P 		902
B 1318.1
(2)
P 		1456.3
(3)
P 		1013.6
(-0.1)
P 		1147.7
(0.8)
P 		707
(-2.2)
P 		599.6
(-3)
P 		857
C 1307.4
(2.4)
P 		1402.1
(3)
P 		1319
(2.5)
P 		1116.4
(1.1)
P 		718.6
(-1.5)
P 		483.7
(-3)
P 		918
avr 1431
(2.8) 		1453.5
(3) 		1037.5
(0) 		1026.7
(-0.1) 		848.3
(-1.3) 		616.5
(-3) 		837
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 452
1 2 3 4 range
A 606.6
(3)
P 		269.8
(-1.5)
P 		252.2
(-1.7)
P 		155.1
(-3)
P 		452
B 530.8
(3)
P 		348.1
(-0.4)
P 		208.7
(-3)
P 		289.5
(-1.5)
P 		322
C 499.5
(3)
P 		288.2
(-1.2)
P 		313.9
(-0.7)
P 		198.9
(-3)
P 		301
avr 545.6
(3) 		302
(-1.4) 		258.3
(-2.2) 		214.5
(-3) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 372
1 2 3 4 5 6 range
A 307.4
(-0.7)
P 		534.2
(3)
P 		169.9
(-3)
P 		207
(-2.4)
P 		337.7
(-0.2)
P 		186.5
(-2.7)
P 		364
B 458.6
(2.4)
P 		484.7
(3)
P 		246.1
(-2.5)
P 		304
(-1.2)
P 		287.2
(-1.5)
P 		223.6
(-3)
P 		261
C 484.6
(3)
P 		427.8
(1.9)
P 		335.7
(0.2)
P 		224.5
(-1.8)
P 		232.5
(-1.7)
P 		161.9
(-3)
P 		323
avr 416.9
(1.7) 		482.2
(3) 		250.6
(-1.8) 		245.2
(-1.9) 		285.8
(-1) 		190.7
(-3) 		292
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175667_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19759
Sequence Type Exemplar sequence
Representative Public ID 404681 NCBI
Target Description g404681 /REP_DB=GenBank Identifier /GB=L23110.1 /PROTEIN_GB=AAA03544.1 /CHR=3 /FEA=Mapped Transcript /DEF=BMP receptor
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065810 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-4) (daf-4) mRNA, complete cds. 11/11 A 
C05D2.1a ENSEMBL cdna:known chromosome:CEL140:III:5624968:5632372:1 gene:C05D2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175781 3 1 NM_001025977 176598_s_at (11)
NM_065810 175667_at (11), 176598_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5624964-5632270(+) 100.0 100.0
Public Domain and Genome References
Ensembl C05D2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02726 Abnormal dauer formation protein 4, isoform a [Caenorhabditis elegans] ref|NP_498211.1| abnormal DAuer Formation family member (daf-4) [Caenorhabditis elegans] sp|P50488|DAF4_CAEEL Cell-surface receptor daf-4 precursor (Abnormal dauer formation protein 4) 0.0
blast 1922354A bone morphogenetic protein receptor gb|AAA03544.1| BMP receptor 0.0
blast AAN63460 Abnormal dauer formation protein 4, isoform c [Caenorhabditis elegans] ref|NP_001021148.1| abnormal DAuer Formation family member (daf-4) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.4E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498211.1 1 230-252
C05D2.1a 1 230-252
Sequence
Target Sequence 
>C. ELEGANS:175667_AT
tattatgattatactcccatcctctcctattctagtctatatgtagcggtggacacctca
cgggcccctcgccgctggcccaccaccttgtctctacttacgcgtcccctaatgatctca
atttgagcacaaccggtgtatatatcaacttacagacgttcaatataagaaccgctaaaa
gttctatgtcttcgtcgtctaaaactcttccaaaatctctgatctcttgcattgtctctc
actcaaccaagttgcccactctcatccaactaactcaaaaacttacctcagcccatgggg
catccccatattctctcattcattcactatattcattgatctgtgataactttgtattgg
cagttcacatcacacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTATGATTATACTCCCATCCTCT 268 663 2404 Antisense
ATCCTCTCCTATTCTAGTCTATATG 584 39 2422 Antisense
TATGTAGCGGTGGACACCTCACGGG 480 655 2443 Antisense
AAAAGTTCTATGTCTTCGTCGTCTA 670 131 2580 Antisense
TCTTCGTCGTCTAAAACTCTTCCAA 466 617 2592 Antisense
AAATCTCTGATCTCTTGCATTGTCT 77 119 2616 Antisense
CACTCTCATCCAACTAACTCAAAAA 42 199 2660 Antisense
AACTCAAAAACTTACCTCAGCCCAT 70 139 2675 Antisense
AGCCCATGGGGCATCCCCATATTCT 389 83 2693 Antisense
ATTCTCTCATTCATTCACTATATTC 373 11 2713 Antisense
GTATTGGCAGTTCACATCACACAAG 510 451 2757 Antisense
Sequence Source GenBank