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[175665_at]

Description g4959717 /REP_DB=GenBank Identifier /GB=AF136238.1 /PROTEIN_GB=AAD34462.1 /CHR=X /FEA=Mapped Transcript /DEF=DAF-12 A1
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 78      6grp_total > 75      4grp_total > 17      6grp_cgc > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1765
1 2 3 4 range
A 822.1
(-3)
P 		1186.1
(-1.5)
P 		1149.3
(-1.7)
P 		2309.5
(3)
P 		1487
B 905.1
(-3)
P 		1211.4
(-1.9)
P 		1094
(-2.3)
P 		2523.1
(3)
P 		1618
C 757.7
(-3)
P 		1277.3
(-0.4)
P 		1122.2
(-1.2)
P 		1980.2
(3)
P 		1223
avr 828.3
(-3) 		1224.9
(-1.4) 		1121.8
(-1.8) 		2270.9
(3) 		1443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1605
1 2 3 4 5 6 range
A 950.8
(-3)
P 		1405.9
(-1.2)
P 		1214.2
(-2)
P 		1156
(-2.2)
P 		1667.6
(-0.2)
P 		2468
(3)
P 		1517
B 863.1
(-3)
P 		1351.5
(0.3)
P 		1743.2
(3)
P 		1711.2
(2.8)
P 		1330.4
(0.2)
P 		1725.3
(2.9)
P 		880
C 940.8
(-3)
P 		1236.9
(-1.3)
P 		1984.6
(3)
P 		1632.1
(1)
P 		1453.8
(-0.1)
P 		1778.9
(1.8)
P 		1044
avr 918.2
(-3) 		1331.4
(-0.7) 		1647.3
(1.1) 		1499.8
(0.3) 		1483.9
(0.2) 		1990.7
(3) 		1073
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 299.3
(0.1)
P 		257.5
(-3)
P 		300.5
(0.2)
P 		338.1
(3)
P 		81
B 288.6
(-2.3)
P 		299.2
(-2)
P 		253.5
(-3)
P 		537.7
(3)
P 		284
C 250.8
(-3)
P 		367.2
(2)
P 		391.1
(3)
P 		333.9
(0.6)
P 		140
avr 279.6
(-3) 		308
(-1.6) 		315
(-1.3) 		403.2
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 175.3
(-3)
P 		500
(1.6)
P 		264.4
(-1.7)
P 		293.2
(-1.3)
P 		503.2
(1.6)
P 		600.9
(3)
P 		426
B 300.3
(-3)
P 		449.9
(-0.4)
P 		423.3
(-0.8)
P 		453.2
(-0.3)
P 		540.5
(1.2)
P 		643.4
(3)
P 		343
C 348.7
(-2.5)
P 		377.4
(-1.9)
P 		505.1
(1)
P 		328.2
(-3)
P 		470.4
(0.2)
P 		595.5
(3)
P 		267
avr 274.8
(-3) 		442.4
(-0) 		397.6
(-0.8) 		358.2
(-1.5) 		504.7
(1.1) 		613.3
(3) 		339
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175665_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19950
Sequence Type Exemplar sequence
Representative Public ID 4959717 NCBI
Target Description g4959717 /REP_DB=GenBank Identifier /GB=AF136238.1 /PROTEIN_GB=AAD34462.1 /CHR=X /FEA=Mapped Transcript /DEF=DAF-12 A1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029376 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-12) (daf-12) mRNA, complete cds. 11/11 None
F11A1.3a ENSEMBL cdna:known chromosome:CEL140:X:10644332:10666794:1 gene:F11A1.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181263 3 1 NM_001029376 175665_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10644331-10666794(+) 100.0 100.0
Public Domain and Genome References
Ensembl F11A1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42284 Hypothetical protein F11A1.3a [Caenorhabditis elegans] ref|NP_001024547.1| abnormal DAuer Formation family member (daf-12) [Caenorhabditis elegans] gb|AAD34462.1| DAF-12 A1 [Caenorhabditis elegans] 0.0
blast CAC42283 Hypothetical protein F11A1.3b [Caenorhabditis elegans] ref|NP_001024548.1| abnormal DAuer Formation family member (daf-12) [Caenorhabditis elegans] gb|AAD34463.1| DAF-12 A2 [Caenorhabditis elegans] 0.0
blast T20733 hypothetical protein F11A1.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.8E-5
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.4E-36
Sequence
Target Sequence 
>C. ELEGANS:175665_AT
caagtcaatttcccgctaacgttatattgtgatgtgtcactattttattgtgattatgtg
attgagaatttactgcttctacatctatcctctatccctgttcagtacaattttgacttt
ctatccttccttcttcagcaccacctatttcttttcaacactgcactggttcatgtttag
ctacggtgaatttatcttgacagtagcttatgtaactttttctgtctgtcttttctcttt
tttaatatgcaacaccacacctctattttccttgcactacctcgatcacacctccatttc
tcaactaccaaaattgttcattattttcccttgttttatatcccggccactctcatctgt
ttgagtaatttcaaagtccgattaccctacccatactttctccattcacaaatgtttctc
aaagctttccttgttttgtttcctattttattattgagtgtggtatcaaaacgattcgta
ttcttttttttcaaacttttttcaattgcaaaaattgtcgttacctggtgttccacaaat
aaaagtgtagtgcaatgtaggtccttaatttctcctgttgtctacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTCAATTTCCCGCTAACGTTAT 325 177 3066 Antisense
AATTTACTGCTTCTACATCTATCCT 443 175 3132 Antisense
TATCCTCTATCCCTGTTCAGTACAA 200 659 3151 Antisense
CTATTTCTTTTCAACACTGCACTGG 138 225 3210 Antisense
GCACTGGTTCATGTTTAGCTACGGT 384 315 3228 Antisense
TGTAACTTTTTCTGTCTGTCTTTTC 641 559 3276 Antisense
TTTAATATGCAACACCACACCTCTA 249 667 3306 Antisense
CGGCCACTCTCATCTGTTTGAGTAA 46 243 3409 Antisense
CCCATACTTTCTCCATTCACAAATG 173 259 3455 Antisense
AATTGTCGTTACCTGGTGTTCCACA 392 177 3578 Antisense
CCTTAATTTCTCCTGTTGTCTACAT 182 269 3628 Antisense
Sequence Source GenBank