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[175662_at] histone H1

Description g2407320 /REP_DB=GenBank Identifier /GB=AF017810.1 /PROTEIN_GB=AAB70665.1 /CHR=X /FEA=Mapped Transcript /DEF=histone H1.1
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 38      4grp_highest_8_8 > 0      4grp_high_8_8 > 37      6grp_highest_nonorm > 04      6grp_total > 37      4grp_total > 42      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1992
1 2 3 4 range
A 4869.2
(-1.2)
P 		5835.2
(3)
P 		5544
(1.7)
P 		4471.2
(-3)
P 		1364
B 5496.9
(-3)
P 		6463.6
(3)
P 		5551.3
(-2.7)
P 		5620.7
(-2.2)
P 		967
C 4791.4
(-3)
P 		6211.9
(3)
P 		4934
(-2.4)
P 		5365.4
(-0.6)
P 		1421
avr 5052.5
(-3) 		6170.2
(3) 		5343.1
(-1.4) 		5152.4
(-2.5) 		1118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5467
1 2 3 4 5 6 range
A 7531.6
(3)
P 		6129.3
(1.3)
P 		3327.6
(-2.1)
P 		2555.5
(-3)
P 		3365.6
(-2)
P 		6219.3
(1.4)
P 		4976
B 7477.4
(3)
P 		5600.7
(0.6)
P 		3128.6
(-2.6)
P 		2907.5
(-2.9)
P 		2815.1
(-3)
P 		5283.6
(0.2)
P 		4662
C 6748.8
(3)
P 		5012.1
(0.8)
P 		3353.3
(-1.3)
P 		2064.9
(-3)
P 		3425.1
(-1.3)
P 		4783.9
(0.5)
P 		4684
avr 7252.6
(3) 		5580.7
(0.9) 		3269.8
(-2) 		2509.3
(-3) 		3201.9
(-2.1) 		5428.9
(0.7) 		4743
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1131
1 2 3 4 range
A 1772.9
(3)
P 		1266.7
(0.3)
P 		1449.3
(1.3)
P 		654.5
(-3)
P 		1118
B 1752.9
(3)
P 		1596.4
(1.3)
P 		1286.4
(-2)
P 		1197.8
(-3)
P 		555
C 1586.1
(1.6)
P 		1785.9
(3)
P 		1719.7
(2.5)
P 		904.7
(-3)
P 		881
avr 1704
(3) 		1549.7
(1.8) 		1485.1
(1.3) 		919
(-3) 		785

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2187
1 2 3 4 5 6 range
A 1388.4
(-0.1)
P 		2179.9
(3)
P 		724.7
(-2.7)
P 		648.1
(-3)
P 		1015.6
(-1.6)
P 		1514.2
(0.4)
P 		1532
B 2601.8
(3)
P 		1864.2
(0.6)
P 		759.7
(-3)
P 		770.1
(-3)
P 		1143.7
(-1.7)
P 		1970.2
(0.9)
P 		1842
C 2501.5
(3)
P 		1529.3
(0.2)
P 		853.5
(-1.7)
P 		415.3
(-3)
P 		1108.3
(-1)
P 		1601.5
(0.4)
P 		2086
avr 2163.9
(3) 		1857.8
(1.8) 		779.3
(-2.4) 		611.2
(-3) 		1089.2
(-1.2) 		1695.3
(1.2) 		1553
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175662_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20017
Sequence Type Exemplar sequence
Representative Public ID 2407320 NCBI
Target Description g2407320 /REP_DB=GenBank Identifier /GB=AF017810.1 /PROTEIN_GB=AAB70665.1 /CHR=X /FEA=Mapped Transcript /DEF=histone H1.1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078009 NCBI Caenorhabditis elegans HIStone family member (his-24) (his-24) mRNA, complete cds. 11/11 A 
M163.3 ENSEMBL cdna:known chromosome:CEL140:X:14490026:14491030:1 gene:M163.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14490029-14491030(+) 94.79 99.56
Public Domain and Genome References
Gene Title histone H1
Gene Symbol his-24
Ensembl M163.3
Entrez Gene 181545 Entrez gene
SwissProt P10771 EMBL-EBI
WormBase CE12450 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U95AV2:580_AT histone 1, H1e hs
HC-G110:580_AT histone 1, H1e hs
HG-U133_PLUS_2:208553_AT histone 1, H1e hs
HG-U133A:208553_AT histone 1, H1e hs
HG-FOCUS:208553_AT histone 1, H1e hs
HG-U133A_2:208553_AT histone 1, H1e hs
HUGENEFL:M60748_AT histone 1, H1e hs
U133_X3P:G4885378_3P_AT histone 1, H1e hs
MOUSE430_2:1422398_AT histone 1, H1e mm
MOE430A:1422398_AT histone 1, H1e mm
MOUSE430A_2:1422398_AT histone 1, H1e mm
MG-U74AV2:94718_AT histone 1, H1e mm
MU11KSUBB:MSA.732.0_AT histone 1, H1e mm
MG-U74CV2:133720_AT Histone 1, H1e (Hist1h1e), mRNA mm
MOE430B:1440330_AT Histone 1, H1e (Hist1h1e), mRNA mm
MOUSE430_2:1440330_AT Histone 1, H1e (Hist1h1e), mRNA mm
MOE430B:1445565_AT Histone 1, H1e (Hist1h1e), mRNA mm
MOUSE430_2:1445565_AT Histone 1, H1e (Hist1h1e), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01892 Hypothetical protein M163.3 [Caenorhabditis elegans] ref|NP_510410.1| HIStone family member (his-24) [Caenorhabditis elegans] sp|P10771|H11_CAEEL Histone H1.1 gb|AAB70665.1| histone H1.1 [Caenorhabditis elegans] 4.0E-31
blast CAA37372 histone H1 [Caenorhabditis elegans] 5.0E-29
blast CAE73994 Hypothetical protein CBG21627 [Caenorhabditis briggsae] 2.0E-27
Protein Domains
Database ID Description E-Value
scop a.4.5.Histone H1/H5 All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Histone H1/H5 2.00000006274879E-22
Pfam IPR005818 EMBL-EBI Histone H1/H5 3.7E-41
Sequence
Target Sequence 
>C. ELEGANS:175662_AT
ccgccaaggcctaaataatctgccttttccccttctaatatgttcctacctctgtcttct
atcatctaacttatcggatctcctcattcccaatccccaatgacacatagaactacgcta
gtgtcctatgttgtttccaatttcttccctgtaagttctccgtgttcttacaatcttcat
gctggtataattatttatctcattcatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCAAGGCCTAAATAATCTGCCT 454 261 654 Antisense
TCTGTCTTCTATCATCTAACTTATC 15 607 704 Antisense
CCCAATCCCCAATGACACATAGAAC 131 259 742 Antisense
GAACTACGCTAGTGTCCTATGTTGT 18 351 763 Antisense
GCTAGTGTCCTATGTTGTTTCCAAT 342 303 770 Antisense
CTATGTTGTTTCCAATTTCTTCCCT 606 223 779 Antisense
TCCAATTTCTTCCCTGTAAGTTCTC 305 587 789 Antisense
AAGTTCTCCGTGTTCTTACAATCTT 229 157 806 Antisense
TTCTCCGTGTTCTTACAATCTTCAT 639 693 809 Antisense
TACAATCTTCATGCTGGTATAATTA 657 641 822 Antisense
TATAATTATTTATCTCATTCATCAA 120 661 839 Antisense
Sequence Source GenBank