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[175661_s_at]

Description g1698713 /REP_DB=GenBank Identifier /GB=U67967.1 /PROTEIN_GB=AAC47829.1 /CHR=3 /FEA=Mapped Transcript /DEF=PTL-1B protein
Cluster 6grp_total > 24      4grp_total > 38      6grp_cgc > 31      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 105.3
(3)
M 		93.9
(2)
A 		34.2
(-3)
A 		41.3
(-2.4)
A 		71
B 109.8
(3)
A 		54.3
(-3)
A 		62.2
(-2.1)
A 		62.5
(-2.1)
A 		56
C 138.5
(3)
A 		66.8
(-1.2)
A 		35.2
(-3)
A 		73.4
(-0.8)
A 		103
avr 117.9
(3) 		71.7
(-0.7) 		43.9
(-3) 		59.1
(-1.8) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 55.6
(1.6)
A 		71.6
(3)
A 		61.5
(2.1)
A 		20.6
(-1.5)
A 		4
(-3)
A 		3.7
(-3)
A 		68
B 89
(3)
A 		67.4
(1.4)
A 		50.3
(0.1)
A 		22.5
(-2.1)
A 		30.7
(-1.4)
A 		10.2
(-3)
A 		79
C 103.7
(3)
P 		65.8
(0.2)
A 		44.4
(-1.4)
A 		42.1
(-1.6)
A 		38.5
(-1.9)
A 		23.7
(-3)
A 		80
avr 82.8
(3) 		68.3
(1.8) 		52.1
(0.4) 		28.4
(-1.6) 		24.4
(-2) 		12.5
(-3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 38.3
(3)
M 		20.4
(-0.3)
A 		8.9
(-2.5)
A 		6
(-3)
A 		32
B 35
(3)
A 		13.4
(-3)
A 		14.4
(-2.7)
A 		13.3
(-3)
A 		22
C 45.8
(3)
A 		19.2
(-1.8)
A 		12.3
(-3)
A 		12.4
(-3)
A 		34
avr 39.7
(3) 		17.7
(-1.5) 		11.9
(-2.7) 		10.6
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 10.2
(-0.7)
A 		25.5
(3)
A 		13.4
(0)
A 		5.2
(-2)
A 		1.2
(-2.9)
A 		0.9
(-3)
A 		25
B 31
(3)
A 		22.4
(1.1)
A 		12.2
(-1.1)
A 		6
(-2.5)
A 		12.5
(-1.1)
A 		3.8
(-3)
A 		27
C 38.4
(3)
P 		20.1
(-0.6)
A 		11.3
(-2.3)
A 		8.5
(-2.9)
A 		12.5
(-2.1)
A 		7.9
(-3)
A 		31
avr 26.5
(3) 		22.7
(2) 		12.3
(-0.8) 		6.6
(-2.4) 		8.7
(-1.8) 		4.2
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175661_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19830
Sequence Type Exemplar sequence
Representative Public ID 1698713 NCBI
Target Description g1698713 /REP_DB=GenBank Identifier /GB=U67967.1 /PROTEIN_GB=AAC47829.1 /CHR=3 /FEA=Mapped Transcript /DEF=PTL-1B protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027407(11), NM_001027406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027407 NCBI Caenorhabditis elegans Protein with Tau-Like repeats family member (ptl-1) (ptl-1) mRNA, complete cds. 11/11 None
NM_001027406 NCBI Caenorhabditis elegans Protein with Tau-Like repeats family member (ptl-1) (ptl-1) mRNA, complete cds. 11/11 None
F42G9.9b.1 ENSEMBL cdna:known chromosome:CEL140:III:763805:771327:1 gene:F42G9.9 11/11 None
F42G9.9c ENSEMBL cdna:known chromosome:CEL140:III:765190:771377:1 gene:F42G9.9 11/11 A 
F42G9.9b.2 ENSEMBL cdna:known chromosome:CEL140:III:765190:771162:1 gene:F42G9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175230 4 2 NM_001027406 172127_x_at (9), 175660_at (10), 175661_s_at (11)
NM_001027407 172127_x_at (9), 175660_at (11), 175661_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:765187-771377(+) 85.71 100.0
Public Domain and Genome References
Ensembl F42G9.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70646 Protein with tau-like repeats protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022577.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] 1.0E-169
blast AAA80687 TAU-1b 1.0E-169
blast AAK70647 Protein with tau-like repeats protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022578.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] gb|AAC47829.1| PTL-1B protein [Caenorhabditis elegans] 1.0E-151
blast AAK70645 Protein with tau-like repeats protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022576.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] gb|AAB97090.1| PTL-1A protein [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 8.0E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.6E-9
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 2.8E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.7E-8
Sequence
Target Sequence 
>C. ELEGANS:175661_S_AT
gcgaagtggcagtaagtcgaccaaaaatgatgacggccacaataattgataagaagaagg
attttgcaaaacgacaaagtgtctcacagagatcttcaagcaattctctactgcccaaca
aatttccaggcgccatttatcctctttctcctgattttatattcaatcgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAAGTGGCAGTAAGTCGACCAAA 200 287 1213 Antisense
TCGACCAAAAATGATGACGGCCACA 145 603 1229 Antisense
ATGATGACGGCCACAATAATTGATA 94 47 1239 Antisense
GCAAAACGACAAAGTGTCTCACAGA 350 319 1278 Antisense
TGTCTCACAGAGATCTTCAAGCAAT 217 559 1292 Antisense
GAGATCTTCAAGCAATTCTCTACTG 52 397 1301 Antisense
TTCTCTACTGCCCAACAAATTTCCA 590 689 1316 Antisense
CTGCCCAACAAATTTCCAGGCGCCA 269 235 1323 Antisense
ACAAATTTCCAGGCGCCATTTATCC 388 111 1330 Antisense
TTATCCTCTTTCTCCTGATTTTATA 377 681 1349 Antisense
TCCTGATTTTATATTCAATCGCTGA 118 595 1361 Antisense
Sequence Source GenBank