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[175660_at]

Description g1698713 /REP_DB=GenBank Identifier /GB=U67967.1 /PROTEIN_GB=AAC47829.1 /CHR=3 /FEA=Mapped Transcript /DEF=PTL-1B protein
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 07      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 04      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 13      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 235.5
(3)
P 		91.5
(-2.5)
P 		77.7
(-3)
P 		167.3
(0.4)
P 		158
B 249.6
(3)
P 		214
(1.7)
P 		85
(-3)
P 		91.3
(-2.8)
P 		165
C 194.8
(3)
P 		137.4
(0.2)
P 		72.6
(-3)
P 		133.1
(-0)
P 		122
avr 226.6
(3) 		147.6
(-0.2) 		78.4
(-3) 		130.6
(-0.9) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 236.2
(3)
P 		144.7
(-0.6)
P 		110.5
(-2)
P 		97.8
(-2.5)
P 		158.5
(-0.1)
P 		84
(-3)
P 		152
B 232.2
(3)
P 		132.9
(-0.2)
P 		73
(-2.1)
P 		99.6
(-1.3)
P 		67
(-2.3)
P 		46.7
(-3)
P 		186
C 163.7
(2.6)
P 		172.6
(3)
P 		75.5
(-1.5)
P 		163.8
(2.6)
P 		54.7
(-2.5)
P 		43.6
(-3)
P 		129
avr 210.7
(3) 		150.1
(0.6) 		86.3
(-1.9) 		120.4
(-0.6) 		93.4
(-1.6) 		58.1
(-3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 85.7
(3)
P 		19.9
(-3)
P 		20.3
(-3)
P 		24.5
(-2.6)
P 		66
B 79.6
(3)
P 		52.8
(0.3)
P 		19.7
(-3)
P 		19.4
(-3)
P 		60
C 64.5
(3)
P 		39.5
(-0.6)
P 		25.3
(-2.6)
P 		22.5
(-3)
P 		42
avr 76.6
(3) 		37.4
(-1.3) 		21.8
(-3) 		22.1
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 43.5
(1.5)
P 		51.5
(3)
P 		24.1
(-2.3)
P 		24.8
(-2.2)
P 		47.8
(2.3)
P 		20.4
(-3)
P 		31
B 80.8
(3)
P 		44.2
(-0.5)
P 		17.7
(-3)
P 		26.4
(-2.1)
P 		27.2
(-2.1)
P 		17.4
(-3)
P 		63
C 60.7
(3)
P 		52.7
(2)
P 		19.2
(-2.4)
P 		32.9
(-0.6)
P 		17.7
(-2.6)
P 		14.6
(-3)
P 		46
avr 61.7
(3) 		49.5
(1.3) 		20.3
(-2.6) 		28
(-1.6) 		30.9
(-1.2) 		17.5
(-3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19830
Sequence Type Exemplar sequence
Representative Public ID 1698713 NCBI
Target Description g1698713 /REP_DB=GenBank Identifier /GB=U67967.1 /PROTEIN_GB=AAC47829.1 /CHR=3 /FEA=Mapped Transcript /DEF=PTL-1B protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027407(11), NM_001027406(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027407 NCBI Caenorhabditis elegans Protein with Tau-Like repeats family member (ptl-1) (ptl-1) mRNA, complete cds. 11/11 None
NM_001027406 NCBI Caenorhabditis elegans Protein with Tau-Like repeats family member (ptl-1) (ptl-1) mRNA, complete cds. 10/11 None
F42G9.9b.1 ENSEMBL cdna:known chromosome:CEL140:III:763805:771327:1 gene:F42G9.9 10/11 None
F42G9.9c ENSEMBL cdna:known chromosome:CEL140:III:765190:771377:1 gene:F42G9.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038502 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175230 4 2 NM_001027406 172127_x_at (9), 175660_at (10), 175661_s_at (11)
NM_001027407 172127_x_at (9), 175660_at (11), 175661_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:765187-771377(+) 85.71 100.0
Public Domain and Genome References
Ensembl F42G9.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK70646 Protein with tau-like repeats protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022577.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] 1.0E-169
blast AAA80687 TAU-1b 1.0E-169
blast AAK70647 Protein with tau-like repeats protein 1, isoform c [Caenorhabditis elegans] ref|NP_001022578.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] gb|AAC47829.1| PTL-1B protein [Caenorhabditis elegans] 1.0E-151
blast AAK70645 Protein with tau-like repeats protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022576.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] gb|AAB97090.1| PTL-1A protein [Caenorhabditis elegans] 1.0E-143
blast AAK70646 Protein with tau-like repeats protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022577.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] 1.0E-142
blast AAK70645 Protein with tau-like repeats protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022576.1| Protein with Tau-Like repeats family member (ptl-1) [Caenorhabditis elegans] gb|AAB97090.1| PTL-1A protein [Caenorhabditis elegans] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 8.0E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.6E-9
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 2.8E-4
Pfam IPR001084 EMBL-EBI Tubulin-binding Tau protein 1.7E-8
Sequence
Target Sequence 
>C. ELEGANS:175660_AT
caatcgctgatgtataccgcgcttaataatatgctttcaaatatttgtgcaactattgaa
ttaatttttgaatatattaactgttcccagccgtagtttctatttgacttccctgagcat
gttgaatcgaagaattttatcccaaggtttcagcttttttatctatattttcattttttg
ctttacaatctgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCGCTGATGTATACCGCGCTTA 594 181 1376 Antisense
TGTATACCGCGCTTAATAATATGCT 474 559 1386 Antisense
TATGCTTTCAAATATTTGTGCAACT 673 655 1405 Antisense
GAATATATTAACTGTTCCCAGCCGT 380 325 1445 Antisense
TTCCCAGCCGTAGTTTCTATTTGAC 441 695 1459 Antisense
TTCTATTTGACTTCCCTGAGCATGT 177 691 1473 Antisense
GACTTCCCTGAGCATGTTGAATCGA 368 371 1481 Antisense
GAATCGAAGAATTTTATCCCAAGGT 564 325 1499 Antisense
TATCCCAAGGTTTCAGCTTTTTTAT 402 657 1513 Antisense
TCAGCTTTTTTATCTATATTTTCAT 471 625 1525 Antisense
TCATTTTTTGCTTTACAATCTGTCT 55 619 1546 Antisense
Sequence Source GenBank