[Home] | [Total List]

[175659_at] Mouse MSMAD protein like

Description g6110600 /REP_DB=GenBank Identifier /GB=AF190910.1 /PROTEIN_GB=AAF03892.1 /CHR=4 /FEA=Mapped Transcript /DEF=Smad protein
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 85      6grp_total > 37      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1394
1 2 3 4 range
A 1185.9
(1)
P 		534
(-2.8)
P 		494.1
(-3)
P 		1536.7
(3)
P 		1043
B 874.9
(-1)
P 		563.7
(-2.4)
P 		418.8
(-3)
P 		1812.8
(3)
P 		1394
C 1098.1
(0.6)
P 		595.8
(-3)
P 		597
(-3)
P 		1440.7
(3)
P 		845
avr 1053
(0) 		564.5
(-2.7) 		503.3
(-3) 		1596.7
(3) 		1093

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 571
1 2 3 4 5 6 range
A 746.7
(2.9)
P 		704.8
(2.1)
P 		750.2
(3)
P 		457.8
(-3)
P 		702.8
(2)
P 		650.4
(1)
P 		292
B 1019.9
(3)
P 		1010.7
(2.9)
P 		744.1
(-0.9)
P 		593.2
(-3)
P 		663.9
(-2)
P 		930.1
(1.7)
P 		427
C 715.8
(-0.3)
P 		1025.7
(3)
P 		504.2
(-2.5)
P 		723.6
(-0.2)
P 		454.6
(-3)
P 		940.8
(2.1)
P 		571
avr 827.5
(1.4) 		913.7
(3) 		666.2
(-1.6) 		591.5
(-3) 		607.1
(-2.7) 		840.4
(1.6) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 431.8
(3)
P 		115.9
(-3)
P 		129.2
(-2.7)
P 		224.9
(-0.9)
P 		316
B 279
(0.8)
P 		139.2
(-2.1)
P 		97
(-3)
P 		386.3
(3)
P 		289
C 363.5
(3)
P 		171.3
(-3)
P 		208.1
(-1.9)
P 		242.9
(-0.8)
P 		192
avr 358.1
(3) 		142.1
(-3) 		144.8
(-2.9) 		284.7
(1) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 137.6
(-2)
P 		250.6
(3)
P 		163.4
(-0.9)
P 		116.1
(-3)
P 		212.1
(1.3)
P 		158.4
(-1.1)
P 		135
B 354.9
(3)
P 		336.4
(2.4)
P 		180.7
(-2.3)
P 		157.1
(-3)
P 		269.7
(0.4)
P 		346.8
(2.8)
P 		198
C 265.3
(1.4)
P 		313
(2.9)
P 		128.3
(-3)
P 		145.5
(-2.4)
P 		147.1
(-2.4)
P 		315
(3)
P 		187
avr 252.6
(1.2) 		300
(3) 		157.5
(-2.3) 		139.6
(-3) 		209.6
(-0.4) 		273.4
(2) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175659_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19848
Sequence Type Exemplar sequence
Representative Public ID 6110600 NCBI
Target Description g6110600 /REP_DB=GenBank Identifier /GB=AF190910.1 /PROTEIN_GB=AAF03892.1 /CHR=4 /FEA=Mapped Transcript /DEF=Smad protein
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069479(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069479 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-14) (daf-14) mRNA, complete cds. 11/11 A 
F01G10.8 ENSEMBL cdna:known chromosome:CEL140:IV:10253588:10255808:1 gene:F01G10.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013163 2/11 Cross Hyb Matching Probes None
GENEFINDER00000013166 2/11 Cross Hyb Matching Probes None
NM_069480 10/11 Negative Strand Matching Probes None
F01G10.9 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10253602-10255814(+) 98.95 100.0
Public Domain and Genome References
Gene Title Mouse MSMAD protein like
Gene Symbol daf-14
Ensembl F01G10.8
Entrez Gene 177908 Entrez gene
SwissProt O17760 EMBL-EBI
WormBase CE29090 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02890 Hypothetical protein F01G10.8 [Caenorhabditis elegans] ref|NP_501880.1| abnormal DAuer Formation family member (daf-14) [Caenorhabditis elegans] gb|AAF03892.1| Smad protein [Caenorhabditis elegans] 1.0E-152
blast XP_594136 PREDICTED: similar to MAD homolog 2 isoform 1 [Bos taurus] 2.0E-21
blast XP_424724 PREDICTED: similar to MADH2 protein [Gallus gallus] 8.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR001132 EMBL-EBI Dwarfin protein 8.3E-18
Pfam IPR001132 EMBL-EBI Dwarfin protein 2.9E-13
Sequence
Target Sequence 
>C. ELEGANS:175659_AT
gagtatgatacagttttccgtattaataacgaacggccggaaataggatcccgatcatga
ttgcttcaatattttcacttcaatgattggttctaagcattcgaatgcgtacccgtttga
ttaatatttccatttctgtcccagtttttaattttcatttcttttggttaaaaaattccc
agtctcttgaatgcttttctaaaatctttaattcaattatttattagaatcttctgtttt
gagaactttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTATGATACAGTTTTCCGTATTA 507 399 857 Antisense
GAACGGCCGGAAATAGGATCCCGAT 299 345 887 Antisense
GGATCCCGATCATGATTGCTTCAAT 190 513 902 Antisense
GATTGCTTCAATATTTTCACTTCAA 647 433 915 Antisense
TGATTGGTTCTAAGCATTCGAATGC 161 563 940 Antisense
GCATTCGAATGCGTACCCGTTTGAT 481 307 953 Antisense
GTACCCGTTTGATTAATATTTCCAT 614 457 965 Antisense
ATATTTCCATTTCTGTCCCAGTTTT 141 19 980 Antisense
TCCATTTCTGTCCCAGTTTTTAATT 79 591 985 Antisense
TTCCCAGTCTCTTGAATGCTTTTCT 579 697 1032 Antisense
GAATCTTCTGTTTTGAGAACTTTGT 159 329 1083 Antisense
Sequence Source GenBank