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[175658_at]

Description g289717 /REP_DB=GenBank Identifier /GB=L15302.1 /PROTEIN_GB=AAA28145.1 /CHR=2 /FEA=Mapped Transcript /DEF=synaptotagmin I
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 16      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 31      6grp_total > 15      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1135
1 2 3 4 range
A 1621.1
(3)
P 		673.8
(-2.3)
P 		554.5
(-3)
P 		802
(-1.6)
P 		1067
B 1442.1
(3)
P 		678.9
(-1.8)
P 		486.1
(-3)
P 		1139.1
(1.1)
P 		956
C 1491.5
(3)
P 		724.8
(-2.4)
P 		637.4
(-3)
P 		861.6
(-1.4)
P 		854
avr 1518.2
(3) 		692.5
(-2.2) 		559.3
(-3) 		934.2
(-0.7) 		959

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 969
1 2 3 4 5 6 range
A 1280.8
(3)
P 		940.8
(0.5)
P 		962.6
(0.6)
P 		666.8
(-1.6)
P 		747
(-1)
P 		478.4
(-3)
P 		802
B 1447.3
(3)
P 		1232.6
(1.1)
P 		1007
(-0.8)
P 		756
(-3)
P 		831
(-2.3)
P 		774.5
(-2.8)
P 		691
C 1186.6
(3)
P 		1153.4
(2.6)
P 		781.4
(-1.7)
P 		926.1
(-0)
P 		667.8
(-3)
P 		864.3
(-0.7)
P 		519
avr 1304.9
(3) 		1108.9
(1) 		917
(-0.9) 		783
(-2.2) 		748.6
(-2.6) 		705.7
(-3) 		599
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 478
1 2 3 4 range
A 590.3
(3)
P 		146.3
(-2.6)
P 		144.9
(-2.7)
P 		117.4
(-3)
P 		473
B 459.9
(3)
P 		167.7
(-2)
P 		112.6
(-3)
P 		242.7
(-0.8)
P 		347
C 493.7
(3)
P 		208.4
(-1.9)
P 		222.2
(-1.7)
P 		145.3
(-3)
P 		348
avr 514.6
(3) 		174.1
(-2.8) 		159.9
(-3) 		168.5
(-2.9) 		355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 236.1
(0.3)
P 		334.6
(3)
P 		209.6
(-0.4)
P 		169.1
(-1.6)
P 		225.4
(-0)
P 		116.5
(-3)
P 		218
B 503.6
(3)
P 		410.3
(1.2)
P 		244.5
(-2.1)
P 		200.2
(-3)
P 		337.6
(-0.3)
P 		288.8
(-1.2)
P 		303
C 439.8
(3)
P 		351.9
(0.9)
P 		198.9
(-2.7)
P 		186.2
(-3)
P 		216.1
(-2.3)
P 		289.3
(-0.6)
P 		254
avr 393.2
(3) 		365.6
(2.2) 		217.7
(-2.1) 		185.2
(-3) 		259.7
(-0.9) 		231.5
(-1.7) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175658_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19736
Sequence Type Exemplar sequence
Representative Public ID 289717 NCBI
Target Description g289717 /REP_DB=GenBank Identifier /GB=L15302.1 /PROTEIN_GB=AAA28145.1 /CHR=2 /FEA=Mapped Transcript /DEF=synaptotagmin I
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026958 NCBI Caenorhabditis elegans F31E8.2a (Synaptotagmin) mRNA, complete cds. 11/11 None
F31E8.2a ENSEMBL cdna:known chromosome:CEL140:II:6810893:6816365:1 gene:F31E8.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174120 2 1 NM_001026958 175658_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6810885-6816360(+) 98.43 100.0
Public Domain and Genome References
Ensembl F31E8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001022129 F31E8.2a [Caenorhabditis elegans] gb|AAA98023.1| Synaptotagmin protein 1, isoform a [Caenorhabditis elegans] sp|P34693|SYT1_CAEEL Synaptotagmin-1 (Synaptotagmin I) gb|AAA28145.1| synaptotagmin I 0.0
blast CAE65975 Hypothetical protein CBG11160 [Caenorhabditis briggsae] 0.0
blast NP_495394 F31E8.2b [Caenorhabditis elegans] gb|AAK68354.1| Synaptotagmin protein 1, isoform b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 5.1E-40
Pfam IPR000008 EMBL-EBI C2 domain 1.1E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022129.1 1 75-97
F31E8.2a 1 75-97
Sequence
Target Sequence 
>C. ELEGANS:175658_AT
ttaaatgccttattcaatctaaatttttcacttttttttaattcaaagagatattatttt
tcctgcttgtcctttttcgttcaaagtttcaatttcccgatgtacataggatctagtcgc
tgtgaaaatccatgcatcaaatatttttattttatttttttataatgcaatgtgtagaaa
tgagtagcaattgtcagtgccaaggcggtgatttaaatattaatctctctttgttttcac
tcttccaacatgttccttatatactcgaattcagagtttctccttttcttaatttattta
acttttccaatttatttattcgttagatgtctattttttggaaatttgtgtttttttctg
tcaatcttgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAATGCCTTATTCAATCTAAATT 49 679 1374 Antisense
CTGCTTGTCCTTTTTCGTTCAAAGT 581 237 1436 Antisense
AAGTTTCAATTTCCCGATGTACATA 314 157 1457 Antisense
GATGTACATAGGATCTAGTCGCTGT 480 409 1472 Antisense
TAGTCGCTGTGAAAATCCATGCATC 499 653 1487 Antisense
AGCAATTGTCAGTGCCAAGGCGGTG 108 77 1559 Antisense
ATTAATCTCTCTTTGTTTTCACTCT 212 13 1592 Antisense
TCACTCTTCCAACATGTTCCTTATA 606 625 1610 Antisense
ATGTTCCTTATATACTCGAATTCAG 214 47 1623 Antisense
GAATTCAGAGTTTCTCCTTTTCTTA 326 325 1640 Antisense
GTGTTTTTTTCTGTCAATCTTGCTG 576 485 1721 Antisense
Sequence Source GenBank