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[175655_s_at]

Description g3047200 /REP_DB=GenBank Identifier /GB=AF031840.1 /PROTEIN_GB=AAC13676.1 /CHR=3 /FEA=Mapped Transcript /DEF=GLY6c
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 80      6grp_total > 03      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 200.4
(-1.5)
P 		239.9
(3)
P 		219.6
(0.7)
P 		186.8
(-3)
P 		53
B 153.6
(0.2)
P 		203.7
(2.5)
P 		213.8
(3)
P 		83.3
(-3)
P 		131
C 251.2
(3)
P 		211.2
(0)
P 		170
(-3)
P 		170.1
(-3)
P 		81
avr 201.7
(1.6) 		218.3
(3) 		201.1
(1.6) 		146.7
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 232.4
(2.2)
P 		185
(0.1)
P 		224.9
(1.9)
P 		248.9
(3)
P 		156.1
(-1.3)
P 		118.5
(-3)
P 		130
B 199.6
(2)
P 		218.4
(3)
P 		146.1
(-0.9)
P 		161.6
(-0.1)
P 		213.6
(2.7)
P 		107.9
(-3)
P 		111
C 280.4
(3)
P 		233.8
(1.7)
P 		217.5
(1.2)
P 		184
(0.2)
P 		241.9
(1.9)
P 		70.8
(-3)
P 		210
avr 237.5
(3) 		212.4
(1.9) 		196.2
(1.2) 		198.2
(1.3) 		203.9
(1.5) 		99.1
(-3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 73
(3)
P 		52.1
(0.3)
P 		57.4
(1)
P 		27.3
(-3)
P 		46
B 49
(2.8)
P 		50.3
(3)
P 		49.5
(2.9)
P 		17.8
(-3)
P 		33
C 83.2
(3)
P 		60.7
(0.5)
P 		59.3
(0.4)
P 		28.7
(-3)
P 		55
avr 68.4
(3) 		54.4
(1.1) 		55.4
(1.2) 		24.6
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 42.8
(-0.7)
P 		65.8
(3)
P 		49
(0.3)
P 		63.1
(2.6)
P 		47.1
(-0)
P 		28.8
(-3)
P 		37
B 69.5
(1)
P 		72.7
(1.4)
P 		35.5
(-3)
P 		42.8
(-2.1)
P 		86.8
(3)
P 		40.2
(-2.5)
P 		51
C 103.9
(3)
P 		71.3
(0.6)
P 		55.4
(-0.6)
P 		37
(-2)
P 		78.3
(1.1)
P 		23.7
(-3)
P 		80
avr 72.1
(3) 		69.9
(2.7) 		46.6
(-0.7) 		47.6
(-0.6) 		70.7
(2.8) 		30.9
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175655_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19758
Sequence Type Exemplar sequence
Representative Public ID 3047200 NCBI
Target Description g3047200 /REP_DB=GenBank Identifier /GB=AF031840.1 /PROTEIN_GB=AAC13676.1 /CHR=3 /FEA=Mapped Transcript /DEF=GLY6c
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027474(11), NM_001027475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027474 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-6) (gly-6) mRNA, complete cds. 11/11 None
NM_001027475 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-6) (gly-6) mRNA, complete cds. 11/11 None
H38K22.5c.1 ENSEMBL cdna:known chromosome:CEL140:III:4324256:4327957:-1 gene:H38K22.5 11/11 A 
H38K22.5b ENSEMBL cdna:known chromosome:CEL140:III:4324272:4327957:-1 gene:H38K22.5 11/11 A 
H38K22.5c.2 ENSEMBL cdna:known chromosome:CEL140:III:4324275:4331197:-1 gene:H38K22.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027473 6/11 Cross Hyb Matching Probes None
H38K22.5a 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175558 3 2 NM_001027473 172832_x_at (11)
NM_001027474 175629_s_at (11), 175655_s_at (11)
NM_001027475 175629_s_at (11), 175655_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4324576-4327959(-) 100.0 100.0
Public Domain and Genome References
Ensembl H38K22.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42317 Hypothetical protein H38K22.5b [Caenorhabditis elegans] ref|NP_001022645.1| GLYcosylation related family member (gly-6) [Caenorhabditis elegans] gb|AAC13675.1| GLY6b [Caenorhabditis elegans] 0.0
blast CAA19707 Hypothetical protein H38K22.5a [Caenorhabditis elegans] ref|NP_001022644.1| GLYcosylation related family member (gly-6) [Caenorhabditis elegans] sp|O61394|GALT6_CAEEL Probable N-acetylgalactosaminyltransferase 6 (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (pp-GaNTase 6) gb|AAC13674.1| GLY6a [Caenorhabditis elegans] 0.0
blast CAE71226 Hypothetical protein CBG18092 [Caenorhabditis briggsae] 0.0
blast CAC42318 Hypothetical protein H38K22.5c [Caenorhabditis elegans] ref|NP_001022646.1| GLYcosylation related family member (gly-6) [Caenorhabditis elegans] gb|AAC13676.1| GLY6c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 6.8E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022645.1 1 17-39
NP_001022646.1 1 17-39
H38K22.5c.1 1 17-39
H38K22.5b 1 17-39
H38K22.5c.2 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:175655_S_AT
tgtccaactcaaactactgcacagccttccggccaggtgacacgggtcccaaaaatcaca
gattgctcggatcaccctgtactatgggattcgacttgtggcagctgtggctctacactg
gcgaccgtcgaatacgtacagatgagcatctatgcttatcagttgttcaacttcttcaca
caacttccgattggaaaattcaattgaaagagtgtgcaggttttgatacagaatactggg
attttaagccaaagatcgggcgattccaaaaccgaaagacaggattgtgtctggcttcac
cggacattttcgatccgacgaaagacgagttcaatccaccaattgtacagaaatgtagaa
gctccaacgatagacagaattggacaataaccgaaatgtcatggctcccggagcatccgt
aaaccaaagccaacaatttaatcatcacacatatctctaatcaatttcaatatttattcg
cattttctttaaatttccatttaaaatcaaaagcattaattacgcgattgccattaaaat
tacccgtttaagacgactttaagccttttgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCAACTCAAACTACTGCACAGC 2 557 1543 Antisense
GACACGGGTCCCAAAAATCACAGAT 332 365 1581 Antisense
AATCACAGATTGCTCGGATCACCCT 170 169 1596 Antisense
GGATCACCCTGTACTATGGGATTCG 554 511 1611 Antisense
TATGGGATTCGACTTGTGGCAGCTG 555 655 1625 Antisense
GGAGCATCCGTAAACCAAAGCCAAC 318 521 1952 Antisense
TAATCATCACACATATCTCTAATCA 459 635 1981 Antisense
CAATATTTATTCGCATTTTCTTTAA 153 181 2010 Antisense
AAAGCATTAATTACGCGATTGCCAT 4 125 2052 Antisense
GCGATTGCCATTAAAATTACCCGTT 608 289 2066 Antisense
TAAGACGACTTTAAGCCTTTTGCCA 619 633 2091 Antisense
Sequence Source GenBank