[Home] | [Total List]

[175654_at] elongation factor

Description g3169333 /REP_DB=GenBank Identifier /GB=AF035197.1 /PROTEIN_GB=AAC17865.1 /CHR=2 /FEA=Mapped Transcript /DEF=ZYG-9
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 50      6grp_total > 37      4grp_total > 55      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 577.7
(3)
P 		295.6
(-3)
P 		384.5
(-1.1)
P 		340.8
(-2)
P 		282
B 462.2
(-0.9)
P 		517.6
(3)
P 		454.4
(-1.4)
P 		431.4
(-3)
P 		86
C 717.3
(3)
P 		472.7
(-1.3)
P 		567.8
(0.4)
P 		375.7
(-3)
P 		342
avr 585.7
(3) 		428.6
(-1.6) 		468.9
(-0.5) 		382.6
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 445.3
(-0.6)
P 		593.1
(3)
P 		489.2
(0.4)
P 		350
(-3)
P 		438.1
(-0.8)
P 		439.1
(-0.8)
P 		243
B 789.2
(3)
P 		635
(0.7)
P 		394.1
(-3)
P 		491
(-1.5)
P 		419.3
(-2.6)
P 		675
(1.3)
P 		395
C 705.6
(3)
P 		551.2
(0.8)
P 		311.2
(-2.6)
P 		286.1
(-3)
P 		511.2
(0.2)
P 		578
(1.2)
P 		420
avr 646.7
(3) 		593.1
(1.8) 		398.2
(-2.5) 		375.7
(-3) 		456.2
(-1.2) 		564
(1.2) 		271
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 210.3
(3)
P 		64.2
(-2.5)
P 		100.5
(-1.1)
P 		49.9
(-3)
P 		160
B 147.4
(3)
P 		127.8
(0.9)
P 		105.3
(-1.6)
P 		91.9
(-3)
P 		56
C 237.4
(3)
P 		135.9
(-0.5)
P 		197.9
(1.6)
P 		63.3
(-3)
P 		174
avr 198.4
(3) 		109.3
(-1.1) 		134.6
(0.1) 		68.4
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 82.1
(-3)
P 		210.9
(3)
P 		106.5
(-1.9)
P 		88.8
(-2.7)
P 		132.2
(-0.7)
P 		106.9
(-1.8)
P 		129
B 274.6
(3)
P 		211.4
(0.9)
P 		95.7
(-3)
P 		130
(-1.8)
P 		170.4
(-0.5)
P 		251.7
(2.2)
P 		179
C 261.5
(3)
P 		168.2
(0.3)
P 		79.2
(-2.4)
P 		57.5
(-3)
P 		165.4
(0.2)
P 		193.5
(1)
P 		204
avr 206.1
(3) 		196.8
(2.5) 		93.8
(-2.9) 		92.1
(-3) 		156
(0.4) 		184
(1.8) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175654_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19725
Sequence Type Exemplar sequence
Representative Public ID 3169333 NCBI
Target Description g3169333 /REP_DB=GenBank Identifier /GB=AF035197.1 /PROTEIN_GB=AAC17865.1 /CHR=2 /FEA=Mapped Transcript /DEF=ZYG-9
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063383(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063383 NCBI Caenorhabditis elegans ZYGote defective: embryonic lethal family member (zyg-9) (zyg-9) mRNA, complete cds. 11/11 A 
F22B5.7 ENSEMBL cdna:known chromosome:CEL140:II:8457740:8464439:1 gene:F22B5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8457736-8464436(+) 100.0 100.0
Public Domain and Genome References
Gene Title elongation factor
Gene Symbol zyg-9
Ensembl F22B5.7
Entrez Gene 174350 Entrez gene
SwissProt O61442 EMBL-EBI
WormBase CE20707 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18421_AT microtubule organization 1 protein (MOR1) at
ATH1-121501:265800_AT microtubule organization 1 protein (MOR1) at
CANINE:1605459_AT similar to colonic and hepatic tumor over-expressed protein isoform a cfa
CANINE_2:CFAAFFX.14292.1.S1_S_AT similar to colonic and hepatic tumor over-expressed protein isoform a cfa
CANINE_2:CFAAFFX.14344.1.S1_S_AT similar to colonic and hepatic tumor over-expressed protein isoform a cfa
DROSOPHILA_2:1628172_AT mini spindles dm
DROSGENOME1:152738_AT mini spindles dm
CHICKEN:GGA.10463.1.S1_S_AT cytoskeleton associated protein 5 gga
CHICKEN:GGA.7921.1.S1_AT cytoskeleton associated protein 5 gga
CHICKEN:GGA.7921.1.S1_S_AT cytoskeleton associated protein 5 gga
CHICKEN:GGAAFFX.22534.1.S1_S_AT cytoskeleton associated protein 5 gga
CHICKEN:GGAAFFX.22534.3.S1_S_AT cytoskeleton associated protein 5 gga
HU35KSUBD:RC_AA496099_S_AT cytoskeleton associated protein 5 hs
HUGENEFL:D43948_AT cytoskeleton associated protein 5 hs
U133_X3P:HS2.76989.2.S1_3P_S_AT cytoskeleton associated protein 5 hs
U133_X3P:HS.76989.0.S1_3P_A_AT cytoskeleton associated protein 5 hs
HG-U133_PLUS_2:1555278_A_AT cytoskeleton associated protein 5 hs
HG-U133A_2:212832_S_AT cytoskeleton associated protein 5 hs
HG-U133_PLUS_2:212832_S_AT cytoskeleton associated protein 5 hs
HG-U133A:212832_S_AT cytoskeleton associated protein 5 hs
HG-U95AV2:37293_AT cytoskeleton associated protein 5 hs
MOE430B:1430647_AT cytoskeleton associated protein 5 mm
MOUSE430_2:1430647_AT cytoskeleton associated protein 5 mm
MU11KSUBA:AA214783_S_AT cytoskeleton associated protein 5 mm
MG-U74AV2:94243_AT cytoskeleton associated protein 5 mm
MOE430A:1437349_AT cytoskeleton associated protein 5 mm
MOUSE430A_2:1437349_AT cytoskeleton associated protein 5 mm
MOUSE430_2:1437349_AT cytoskeleton associated protein 5 mm
MU19KSUBB:TC34282_I_AT cytoskeleton associated protein 5 mm
MOE430B:1442271_AT Cytoskeleton associated protein 5, mRNA (cDNA clone IMAGE:4484883) mm
MOUSE430_2:1442271_AT Cytoskeleton associated protein 5, mRNA (cDNA clone IMAGE:4484883) mm
MU11KSUBA:AA204381_S_AT Cytoskeleton associated protein 5, mRNA (cDNA clone IMAGE:4484883) mm
RG-U34B:RC_AA946066_AT similar to colonic and hepatic tumor over-expressed protein isoform a rn
RAE230A:1388405_AT similar to colonic and hepatic tumor over-expressed protein isoform a rn
RAT230_2:1388405_AT similar to colonic and hepatic tumor over-expressed protein isoform a rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
922 spindle pole inferred from direct assay QuickGO AmiGO
5813 centrosome inferred from direct assay QuickGO AmiGO
5737 cytoplasm inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8017 microtubule binding inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE57635 Hypothetical protein CBG00620 [Caenorhabditis briggsae] 0.0
blast CAA90359 Hypothetical protein F22B5.7 [Caenorhabditis elegans] ref|NP_495784.1| ZYGote defective: embryonic lethal family member (zyg-9) [Caenorhabditis elegans] gb|AAC17865.1| ZYG-9 [Caenorhabditis elegans] 0.0
blast CAF93042 unnamed protein product [Tetraodon nigroviridis] 9.0E-56
Sequence
Target Sequence 
>C. ELEGANS:175654_AT
cattgataattttatccctgccccttaaagtgcataacacgaaaataacgagtaatttct
tacacccgcatttttactggtattttttagctctatgcttcaattttatttgcttgtgaa
atgtattttgtattgtaaaatcattttgattaccagaagaatttactgatctggaacttt
aatttattgattgatattcgtggaagagctcggaagtatttcagttttttagcgcttatt
tcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGATAATTTTATCCCTGCCCCT 656 217 4258 Antisense
TTATCCCTGCCCCTTAAAGTGCATA 357 669 4269 Antisense
CTGCCCCTTAAAGTGCATAACACGA 100 237 4275 Antisense
ACGAGTAATTTCTTACACCCGCATT 359 93 4305 Antisense
CTTACACCCGCATTTTTACTGGTAT 71 219 4316 Antisense
TACTGGTATTTTTTAGCTCTATGCT 450 647 4332 Antisense
TAGCTCTATGCTTCAATTTTATTTG 308 649 4345 Antisense
GAATTTACTGATCTGGAACTTTAAT 492 323 4416 Antisense
GATTGATATTCGTGGAAGAGCTCGG 540 429 4446 Antisense
GAGCTCGGAAGTATTTCAGTTTTTT 693 383 4463 Antisense
TTCAGTTTTTTAGCGCTTATTTCAT 36 689 4477 Antisense
Sequence Source GenBank