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[175651_at]

Description g2677835 /REP_DB=GenBank Identifier /GB=AF020788.1 /PROTEIN_GB=AAC47809.1 /CHR=5 /FEA=Mapped Transcript /DEF=SEL-10
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 88      6grp_total > 95      4grp_total > 56      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 1196.4
(1.5)
P 		1042.1
(-2.7)
P 		1250.8
(3)
P 		1031.3
(-3)
P 		220
B 1138.7
(0.2)
P 		1092.1
(-0.5)
P 		1321.3
(3)
P 		930.9
(-3)
P 		390
C 1072.1
(-3)
P 		1236.1
(3)
P 		1137.4
(-0.6)
P 		1221
(2.4)
P 		164
avr 1135.7
(-0.4) 		1123.4
(-0.9) 		1236.5
(3) 		1061.1
(-3) 		175

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 863
1 2 3 4 5 6 range
A 1333.3
(-0.1)
P 		1043.2
(-2.1)
P 		912.9
(-3)
P 		1378.3
(0.2)
P 		1776.1
(3)
P 		1630
(2)
P 		863
B 1175.4
(-0.9)
P 		1190.4
(-0.7)
P 		1023.7
(-3)
P 		1402.5
(2.2)
P 		1462.9
(3)
P 		1396.6
(2.1)
P 		439
C 1276.2
(-1.2)
P 		1080.6
(-3)
P 		1093
(-2.9)
P 		1513.1
(0.9)
P 		1327.7
(-0.8)
P 		1750.2
(3)
P 		670
avr 1261.6
(-0.4) 		1104.7
(-2) 		1009.9
(-3) 		1431.3
(1.3) 		1522.2
(2.3) 		1592.3
(3) 		582
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 435.6
(3)
P 		226.2
(-1.4)
P 		327
(0.7)
P 		151
(-3)
P 		285
B 363.1
(3)
P 		269.7
(-0.4)
P 		306.2
(0.9)
P 		198.4
(-3)
P 		165
C 354.9
(1.7)
P 		355.4
(1.7)
P 		396.4
(3)
P 		205.9
(-3)
P 		191
avr 384.5
(3) 		283.8
(-0) 		343.2
(1.8) 		185.1
(-3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 245.8
(-2.2)
P 		371
(0.1)
P 		198.8
(-3)
P 		349.6
(-0.3)
P 		535.9
(3)
P 		396.9
(0.5)
P 		337
B 409
(-0.2)
P 		396.2
(-0.4)
P 		248.6
(-3)
P 		371.5
(-0.9)
P 		594.3
(3)
P 		520.8
(1.7)
P 		346
C 473
(0.8)
P 		329.7
(-2)
P 		278.2
(-3)
P 		304.3
(-2.5)
P 		429.6
(-0)
P 		585.9
(3)
P 		308
avr 375.9
(-0.1) 		365.6
(-0.3) 		241.9
(-3) 		341.8
(-0.8) 		519.9
(3) 		501.2
(2.6) 		278
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175651_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19926
Sequence Type Exemplar sequence
Representative Public ID 2677835 NCBI
Target Description g2677835 /REP_DB=GenBank Identifier /GB=AF020788.1 /PROTEIN_GB=AAC47809.1 /CHR=5 /FEA=Mapped Transcript /DEF=SEL-10
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028804(11), NM_074020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028804 NCBI Caenorhabditis elegans Suppressor/Enhancer of Lin-12 family member (sel-10) (sel-10) mRNA, complete cds. 11/11 None
NM_074020 NCBI Caenorhabditis elegans Suppressor/Enhancer of Lin-12 family member (sel-10) (sel-10) mRNA, complete cds. 11/11 A 
F55B12.3b.2 ENSEMBL cdna:known chromosome:CEL140:V:13820721:13825661:1 gene:F55B12.3 11/11 None
F55B12.3a ENSEMBL cdna:known chromosome:CEL140:V:13821949:13825569:1 gene:F55B12.3 11/11 A 
F55B12.3b.1 ENSEMBL cdna:known chromosome:CEL140:V:13821950:13826768:1 gene:F55B12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009649 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13821948-13825569(+) 100.0 100.0
Public Domain and Genome References
Ensembl F55B12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42307 Hypothetical protein F55B12.3b [Caenorhabditis elegans] ref|NP_001023975.1| Suppressor/Enhancer of Lin-12 family member (sel-10) [Caenorhabditis elegans] 0.0
blast CAB02129 Hypothetical protein F55B12.3a [Caenorhabditis elegans] ref|NP_506421.1| Suppressor/Enhancer of Lin-12 family member (sel-10) [Caenorhabditis elegans] sp|Q93794|SEL10_CAEEL F-box/WD-repeat protein sel-10 (Suppressor/enhancer of lin-12) (Sel-10 protein) gb|AAC47809.1| SEL-10 [Caenorhabditis elegans] 0.0
blast CAE66232 Hypothetical protein CBG11475 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.7E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.4E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-12
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.0E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.6E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.3E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.7E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.4E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-12
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 9.0E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.6E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-11
Sequence
Target Sequence 
>C. ELEGANS:175651_AT
ctgtatacccttaacgaattctcgaatctctgcccctgtacatagaatgttcttgcttag
gaactaatattgtacacgatgccctcatttttaaatcaacaatgctatcatatcatggaa
tatagtcaaaagccaacagtattgaaacgtcaaatttgaggaaaaacgaatttatgtgtc
tattcaactcgttatatcccggcccgccactataatttttcttttttttactattttttg
tcagattctgtctcacactcttctctttctcttttcgattgtttcccattaagttatcgg
gtttgattgattttatatttttattcaaatgatgggctcactactcccagattttgattt
cctttatacaatagttcagtcagtatgttagtccttatgtgacttctttttgatctaatg
agctttttagtccctgtcggttccctcttttttcgctttcatttttcgtaaaaactactt
gtcaaaattcaaagttctaccctcgacattgccttttttaaaatttttgtcttcgtttta
tcgacttatgccagacgtcattcgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTATACCCTTAACGAATTCTCGA 683 237 1768 Antisense
ATCTCTGCCCCTGTACATAGAATGT 529 31 1793 Antisense
AATATTGTACACGATGCCCTCATTT 13 175 1833 Antisense
CTATTCAACTCGTTATATCCCGGCC 151 223 1947 Antisense
TTTTGTCAGATTCTGTCTCACACTC 657 677 2003 Antisense
AATGATGGGCTCACTACTCCCAGAT 401 163 2095 Antisense
TACTCCCAGATTTTGATTTCCTTTA 423 645 2109 Antisense
TCCTTATGTGACTTCTTTTTGATCT 52 593 2159 Antisense
AAATTCAAAGTTCTACCCTCGACAT 654 93 2252 Antisense
GTCTTCGTTTTATCGACTTATGCCA 351 469 2296 Antisense
GACTTATGCCAGACGTCATTCGATT 136 373 2310 Antisense
Sequence Source GenBank