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[175650_s_at] gephyrin like

Description g2811219 /REP_DB=GenBank Identifier /GB=AF042069.1 /PROTEIN_GB=AAB97841.1 /CHR=5 /FEA=Mapped Transcript /DEF=LIN-46
Cluster 6grp_high1_10_10 > 63      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_total > 62      4grp_total > 40      6grp_cgc > 75      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 113
(-3)
P 		172.7
(0.1)
P 		228.3
(3)
P 		172.4
(0.1)
P 		115
B 85.2
(-3)
P 		118.8
(-1.6)
P 		230.9
(3)
P 		107.2
(-2.1)
P 		146
C 126.4
(-3)
P 		144.8
(-1.9)
P 		226.1
(3)
P 		144.2
(-1.9)
P 		100
avr 108.2
(-3) 		145.4
(-1.1) 		228.4
(3) 		141.3
(-1.3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 15.2
(-3)
A 		111.8
(0.7)
P 		172.4
(3)
P 		149.9
(2.1)
P 		119
(1)
P 		102.4
(0.3)
P 		157
B 52.1
(-3)
P 		119.6
(0.7)
P 		161.8
(3)
P 		137.7
(1.7)
P 		80.1
(-1.5)
P 		81.1
(-1.4)
P 		110
C 56.2
(-3)
P 		109
(-0.1)
P 		155.9
(2.4)
P 		166.4
(3)
P 		57.5
(-2.9)
P 		93.8
(-1)
P 		110
avr 41.2
(-3) 		113.5
(0.5) 		163.4
(3) 		151.3
(2.4) 		85.5
(-0.8) 		92.4
(-0.5) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 41.1
(-0.2)
P 		37.5
(-0.9)
P 		59.7
(3)
P 		25.2
(-3)
P 		35
B 27.2
(-2.2)
P 		29.3
(-1.7)
P 		53.5
(3)
P 		22.9
(-3)
P 		31
C 41.8
(-1.1)
P 		41.6
(-1.1)
P 		78.8
(3)
P 		24.3
(-3)
P 		55
avr 36.7
(-1.1) 		36.1
(-1.2) 		64
(3) 		24.1
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2.8
(-3)
A 		39.8
(3)
P 		37.6
(2.6)
P 		38
(2.7)
P 		35.9
(2.4)
P 		24.9
(0.6)
P 		37
B 18.1
(-3)
P 		39.8
(3)
P 		39.3
(2.9)
P 		36.5
(2.1)
P 		32.6
(1)
P 		30.2
(0.3)
P 		22
C 20.8
(-2.4)
P 		33.3
(1.2)
P 		39.7
(3)
P 		33.5
(1.2)
P 		18.6
(-3)
P 		31.4
(0.6)
P 		21
avr 13.9
(-3) 		37.6
(2.7) 		38.9
(3) 		36
(2.3) 		29
(0.6) 		28.8
(0.6) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175650_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19920
Sequence Type Exemplar sequence
Representative Public ID 2811219 NCBI
Target Description g2811219 /REP_DB=GenBank Identifier /GB=AF042069.1 /PROTEIN_GB=AAB97841.1 /CHR=5 /FEA=Mapped Transcript /DEF=LIN-46
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073845 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-46) (lin-46) mRNA, complete cds. 11/11 A 
SNAP00000011790 ENSEMBL cdna:SNAP chromosome:CEL140:V:12970646:12973167:1 10/11 None
GENEFINDER00000011796 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12971322:12973167:1 11/11 None
R186.4 ENSEMBL cdna:known chromosome:CEL140:V:12971445:12973322:1 gene:R186.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12971444-12973322(+) 100.0 100.0
Public Domain and Genome References
Gene Title gephyrin like
Gene Symbol lin-46
Ensembl R186.4
Entrez Gene 179782 Entrez gene
SwissProt Q22010 EMBL-EBI
WormBase CE27771 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6777 Mo-molybdopterin cofactor biosynthesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01440 Hypothetical protein R186.4 [Caenorhabditis elegans] ref|NP_506246.1| abnormal cell LINeage family member (lin-46) [Caenorhabditis elegans] gb|AAB97842.1| LIN-46 [Caenorhabditis elegans] gb|AAB97841.1| LIN-46 [Caenorhabditis elegans] 0.0
blast CAB01440 Hypothetical protein R186.4 [Caenorhabditis elegans] ref|NP_506246.1| abnormal cell LINeage family member (lin-46) [Caenorhabditis elegans] gb|AAB97842.1| LIN-46 [Caenorhabditis elegans] gb|AAB97841.1| LIN-46 [Caenorhabditis elegans] 1.0E-169
blast CAE64704 Hypothetical protein CBG09490 [Caenorhabditis briggsae] 1.0E-84
blast CAE64704 Hypothetical protein CBG09490 [Caenorhabditis briggsae] 1.0E-56
blast CAE58791 Hypothetical protein CBG01997 [Caenorhabditis briggsae] 7.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR005110 EMBL-EBI MoeA N-terminal region, domain I and II 1.6E-54
Pfam IPR005110 EMBL-EBI MoeA N-terminal region, domain I and II 2.5E-15
Pfam IPR005110 EMBL-EBI MoeA N-terminal region, domain I and II 5.7E-7
Pfam IPR005110 EMBL-EBI MoeA N-terminal region, domain I and II 1.6E-54
Sequence
Target Sequence 
>C. ELEGANS:175650_S_AT
acgaacggctgcaagttttgcctgtgtgcttgtgactgttggaggagcacaggtgatacg
ggaagtagctaaaacgttgaaattcaaatttgagattcaagatgtagactcaactccagg
aaacttcaccgtttcgactggaaagattgatgaaacccctgtagtgctttcaatttttcc
agaatatcatgtttcatcttggattggagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAACGGCTGCAAGTTTTGCCTGT 51 93 753 Antisense
GGCTGCAAGTTTTGCCTGTGTGCTT 611 539 759 Antisense
CTGTGTGCTTGTGACTGTTGGAGGA 251 241 774 Antisense
GGAGCACAGGTGATACGGGAAGTAG 163 519 796 Antisense
TCAAGATGTAGACTCAACTCCAGGA 140 633 849 Antisense
CTCAACTCCAGGAAACTTCACCGTT 435 227 861 Antisense
ACTTCACCGTTTCGACTGGAAAGAT 627 99 875 Antisense
ATTGATGAAACCCCTGTAGTGCTTT 488 5 898 Antisense
GAAACCCCTGTAGTGCTTTCAATTT 142 359 904 Antisense
ATTTTTCCAGAATATCATGTTTCAT 473 15 925 Antisense
TCATGTTTCATCTTGGATTGGAGCA 359 621 939 Antisense
Sequence Source GenBank