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[175648_at]

Description g1019933 /REP_DB=GenBank Identifier /GB=U36198.1 /PROTEIN_GB=AAA79336.1 /CHR=1 /FEA=Mapped Transcript /DEF=CeMef-2
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 39      4grp_high_8_8 > 03      6grp_highest_nonorm > 30      6grp_total > 27      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1085
1 2 3 4 range
A 1168.1
(-0.9)
P 		974.6
(-2.4)
P 		897.7
(-3)
P 		1669.8
(3)
P 		772
B 1430.3
(0.1)
P 		896.9
(-3)
P 		905.5
(-3)
P 		1938
(3)
P 		1041
C 1247.2
(-0.1)
P 		1084
(-1.3)
P 		853.5
(-3)
P 		1671.7
(3)
P 		818
avr 1281.9
(-0.3) 		985.2
(-2.3) 		885.6
(-3) 		1759.8
(3) 		874

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 827
1 2 3 4 5 6 range
A 1378.6
(3)
P 		1037.2
(0.5)
P 		620.9
(-2.5)
P 		551.5
(-3)
P 		773.5
(-1.4)
P 		692.5
(-2)
P 		827
B 1357.1
(3)
P 		1022.5
(0.3)
P 		678.3
(-2.5)
P 		818.8
(-1.4)
P 		616
(-3)
P 		870.7
(-0.9)
P 		741
C 1237.3
(3)
P 		1073.2
(1.4)
P 		647.5
(-2.9)
P 		737.8
(-2)
P 		635.9
(-3)
P 		919.9
(-0.2)
P 		601
avr 1324.3
(3) 		1044.3
(0.5) 		648.9
(-3) 		702.7
(-2.5) 		675.1
(-2.8) 		827.7
(-1.4) 		675
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 425.3
(3)
P 		211.6
(-3)
P 		234.7
(-2.4)
P 		244.4
(-2.1)
P 		214
B 456.1
(3)
P 		221.5
(-2.7)
P 		209.8
(-3)
P 		413
(2)
P 		246
C 412.9
(3)
P 		311.7
(-1.6)
P 		297.5
(-2.3)
P 		281.9
(-3)
P 		131
avr 431.4
(3) 		248.3
(-3) 		247.3
(-3) 		313.1
(-0.9) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 254.1
(0.1)
P 		368.9
(3)
P 		135.2
(-3)
P 		139.9
(-2.9)
P 		233.4
(-0.5)
P 		168.6
(-2.1)
P 		234
B 472.2
(3)
P 		340.3
(0.4)
P 		164.7
(-3)
P 		216.9
(-2)
P 		250.3
(-1.3)
P 		324.7
(0.1)
P 		308
C 458.6
(3)
P 		327.5
(0.5)
P 		164.8
(-2.7)
P 		148.4
(-3)
P 		205.8
(-1.9)
P 		307.9
(0.1)
P 		310
avr 395
(3) 		345.6
(1.8) 		154.9
(-3) 		168.4
(-2.7) 		229.8
(-1.1) 		267.1
(-0.2) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175648_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19652
Sequence Type Exemplar sequence
Representative Public ID 1019933 NCBI
Target Description g1019933 /REP_DB=GenBank Identifier /GB=U36198.1 /PROTEIN_GB=AAA79336.1 /CHR=1 /FEA=Mapped Transcript /DEF=CeMef-2
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060040
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W10D5.1 ENSEMBL cdna:known chromosome:CEL140:I:9104081:9108951:1 gene:W10D5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9104009-9108915(+) 85.77 99.52
Public Domain and Genome References
Ensembl W10D5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61037 Hypothetical protein W10D5.1 [Caenorhabditis elegans] ref|NP_492441.1| related to vertebrate MEF2 transcription factor family member (mef-2) [Caenorhabditis elegans] 1.0E-142
blast T26328 hypothetical protein W10D5.1 - Caenorhabditis elegans 1.0E-140
blast AAA79337 CeMEF-2 gb|AAA79336.1| CeMef-2 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR002100 EMBL-EBI Transcription factor, MADS-box 1.6E-25
Sequence
Target Sequence 
>C. ELEGANS:175648_AT
ctccacatgtttttctcgtttacttgaatttcccccattttcctcacgtttcgccctgtt
gtcgaagtggagtgcaacactacagtactctttaaaggtcttccccgtgcatctcatttg
gtatgccgatcgtgtcgagaccgtttaccgtaattttgcattagagcgttgttttatttc
gaaatttttgtgattcaagacataaaacttcctctccgacattccacgtattgctcctct
tctttttttttaaatttatctctgcaaacgtgctcaattgttaattttcgatggagcccg
tatgcataaagacaaaaatccaaaaaattttgatattttcatgttctgaagaaaaaaaca
taaaatgcgggtattcttctctcattttttatttgtttttatttttcctatatttatttt
atttttcattctttcatttttgtctctctctcttgtgatttctccctgtatttttccccc
tagtcttctcactgattcggtagttttttctctcaaaaatgttcccatttcgccaccccg
gtctaattattata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCACATGTTTTTCTCGTTTACTT 406 235 1295 Antisense
CGTTTCGCCCTGTTGTCGAAGTGGA 502 247 1341 Antisense
TCCCCGTGCATCTCATTTGGTATGC 154 597 1396 Antisense
CGATCGTGTCGAGACCGTTTACCGT 122 1 1421 Antisense
CAAGACATAAAACTTCCTCTCCGAC 179 185 1490 Antisense
AATTTTCGATGGAGCCCGTATGCAT 313 175 1577 Antisense
AATGCGGGTATTCTTCTCTCATTTT 351 167 1658 Antisense
CCTAGTCTTCTCACTGATTCGGTAG 175 269 1773 Antisense
TGATTCGGTAGTTTTTTCTCTCAAA 669 563 1787 Antisense
TCAAAAATGTTCCCATTTCGCCACC 535 629 1807 Antisense
TCGCCACCCCGGTCTAATTATTATA 688 597 1824 Antisense
Sequence Source GenBank