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[175646_at]

Description g6714548 /REP_DB=GenBank Identifier /GB=AB029809.1 /PROTEIN_GB=BAA89489.1 /CHR=1 /FEA=Mapped Transcript /DEF=ABF-1
Cluster 6grp_total > 52      4grp_total > 36      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 40.2
(0.5)
A 		53.1
(2.8)
A 		54.3
(3)
A 		21
(-3)
A 		33
B 47.3
(1.8)
A 		55
(3)
A 		14.9
(-3)
A 		47.9
(1.9)
A 		40
C 30.3
(-1.2)
A 		59.8
(1.3)
A 		8.3
(-3)
A 		80
(3)
A 		72
avr 39.3
(-0.3) 		56
(3) 		25.8
(-3) 		49.6
(1.7) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 44
(1.4)
A 		9.6
(-3)
A 		56.3
(3)
A 		56.2
(3)
P 		31.4
(-0.2)
A 		47.6
(1.9)
A 		47
B 41.7
(2.1)
A 		39.4
(1.8)
A 		16.3
(-1.6)
A 		47.6
(3)
A 		7
(-3)
A 		30.2
(0.4)
A 		41
C 10.8
(-2.6)
A 		51.3
(0.2)
A 		90.5
(3)
A 		24.6
(-1.6)
A 		34.1
(-1)
A 		5
(-3)
A 		86
avr 32.2
(-1.4) 		33.4
(-1.2) 		54.4
(3) 		42.8
(0.7) 		24.2
(-3) 		27.6
(-2.3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.6
(3)
A 		11.5
(1.4)
A 		14.2
(2.8)
A 		3.1
(-3)
A 		12
B 15.1
(3)
A 		13.6
(2.2)
A 		3.5
(-3)
A 		10.2
(0.5)
A 		12
C 10
(-0)
A 		17.2
(3)
A 		2.9
(-3)
A 		13.5
(1.4)
A 		14
avr 13.2
(2.3) 		14.1
(3) 		6.9
(-3) 		8.9
(-1.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8.1
(-0.4)
A 		3.4
(-3)
A 		12.3
(1.9)
A 		14.3
(3)
P 		9.5
(0.4)
A 		11.6
(1.5)
A 		11
B 14.5
(3)
A 		13.1
(2.3)
A 		4
(-2.4)
A 		12.6
(2)
A 		2.8
(-3)
A 		11.3
(1.4)
A 		12
C 4
(-2.4)
A 		15.7
(0.9)
A 		23
(3)
A 		5
(-2.1)
A 		11
(-0.4)
A 		1.7
(-3)
A 		21
avr 8.9
(-1.8) 		10.7
(0.3) 		13.1
(3) 		10.6
(0.2) 		7.8
(-3) 		8.2
(-2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175646_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19636
Sequence Type Exemplar sequence
Representative Public ID 6714548 NCBI
Target Description g6714548 /REP_DB=GenBank Identifier /GB=AB029809.1 /PROTEIN_GB=BAA89489.1 /CHR=1 /FEA=Mapped Transcript /DEF=ABF-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058852 NCBI Caenorhabditis elegans AntiBacterial Factor related family member (abf-1) (abf-1) mRNA, complete cds. 11/11 None
C50F2.9 ENSEMBL cdna:known chromosome:CEL140:I:3885693:3887273:-1 gene:C50F2.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013847 8/11 Cross Hyb Matching Probes None
SNAP00000013848 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3886072-3887273(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol abf-1
Ensembl C50F2.9
Entrez Gene 266827 Entrez gene
SwissProt Q9NL72 EMBL-EBI
WormBase CE27879 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68260 Antibacterial factor related protein 1 [Caenorhabditis elegans] ref|NP_491253.1| AntiBacterial Factor related family member (abf-1) [Caenorhabditis elegans] dbj|BAA89489.1| ABF-1 [Caenorhabditis elegans] 6.0E-41
blast BAA89491.1 ABF-1 [Caenorhabditis elegans] 8.0E-21
blast BAC57992.1 ASABF-zeta [Ascaris suum] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:175646_AT
tcccaaccgttcgttcagatttcgaccaaaaatcatctcaaaaagaagttcgagaaaatg
ttgcacgagagatgttacgattggaaaaatgattatatggaagaggccaacacacacata
aaaggcagaagcatgcttccggtaaactctggagattattgcagaacaactttcgatgct
ttacttctgccttctccttgttctcctacttccgaacaacggagtatcgagtgaagcatc
atgtgcaagaatggatgttccggtaatgcagaggatcgcacaaggactttgcacatctag
ttgtacagcacagaaatgcatgaccggaatatgcaaaaaagtcgactcgcatccaacatg
cttctgtggaggttgttcaaacgccaacgatgtgtcacttgatactttgatttctcagct
cccacacaactaaccatatttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCAACCGTTCGTTCAGATTTCGA 236 599 29 Antisense
GAAGCATGCTTCCGGTAAACTCTGG 365 341 156 Antisense
GTTCTCCTACTTCCGAACAACGGAG 103 407 228 Antisense
GTTCCGGTAATGCAGAGGATCGCAC 94 441 285 Antisense
GGATCGCACAAGGACTTTGCACATC 311 513 301 Antisense
GACTTTGCACATCTAGTTGTACAGC 463 371 313 Antisense
AAAAAGTCGACTCGCATCCAACATG 673 129 364 Antisense
CATGCTTCTGTGGAGGTTGTTCAAA 124 211 385 Antisense
AAACGCCAACGATGTGTCACTTGAT 646 123 407 Antisense
TGATACTTTGATTTCTCAGCTCCCA 289 565 428 Antisense
CTCCCACACAACTAACCATATTTAT 6 235 447 Antisense
Sequence Source GenBank