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[175642_s_at]

Description g6714550 /REP_DB=GenBank Identifier /GB=AB029810.1 /PROTEIN_GB=BAA89490.1 /CHR=1 /FEA=Mapped Transcript /DEF=ABF-2
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 96      4grp_total > 10      6grp_highest_sub > In      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1733
1 2 3 4 range
A 69.1
(-3)
P 		111.8
(-2.9)
P 		103
(-2.9)
P 		1789.9
(3)
P 		1721
B 57.4
(-3)
P 		169.8
(-2.6)
P 		108.6
(-2.8)
P 		1584.8
(3)
P 		1527
C 79.5
(-3)
P 		140.9
(-2.8)
P 		95.6
(-2.9)
P 		1693.8
(3)
P 		1614
avr 68.7
(-3) 		140.8
(-2.7) 		102.4
(-2.9) 		1689.5
(3) 		1621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 52.4
(-3)
P 		82.7
(-2.6)
P 		81.7
(-2.6)
P 		189.5
(-1)
P 		316.2
(0.8)
P 		464.6
(3)
P 		412
B 79.3
(-3)
P 		112.6
(-2.4)
P 		87.1
(-2.9)
P 		198.9
(-1)
P 		416.5
(2.7)
P 		432.8
(3)
P 		354
C 92.6
(-3)
P 		109.4
(-2.7)
P 		90.1
(-3)
P 		176.4
(-1.7)
P 		328.2
(0.5)
P 		499.9
(3)
P 		410
avr 74.8
(-3) 		101.6
(-2.6) 		86.3
(-2.8) 		188.3
(-1.3) 		353.6
(1.3) 		465.8
(3) 		391
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 25.1
(-3)
P 		24.3
(-3)
P 		26.9
(-2.9)
P 		262
(3)
P 		238
B 18.3
(-3)
P 		41.9
(-2.6)
P 		25.2
(-2.9)
P 		337.7
(3)
P 		319
C 26.3
(-3)
P 		40.5
(-2.7)
P 		33.3
(-2.8)
P 		285.6
(3)
P 		259
avr 23.2
(-3) 		35.6
(-2.7) 		28.5
(-2.9) 		295.1
(3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 9.7
(-3)
P 		29.4
(-1.9)
P 		17.8
(-2.5)
P 		48.1
(-0.8)
P 		95.4
(2)
P 		113.1
(3)
P 		103
B 27.6
(-2.7)
P 		37.5
(-2.3)
P 		21.1
(-3)
P 		52.7
(-1.7)
P 		169.2
(3)
P 		161.4
(2.7)
P 		148
C 34.3
(-2.5)
P 		33.4
(-2.6)
P 		22.9
(-3)
P 		35.5
(-2.5)
P 		106.2
(0.5)
P 		167.3
(3)
P 		144
avr 23.9
(-2.8) 		33.4
(-2.4) 		20.6
(-3) 		45.4
(-1.8) 		123.6
(1.9) 		147.3
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175642_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19631
Sequence Type Exemplar sequence
Representative Public ID 6714550 NCBI
Target Description g6714550 /REP_DB=GenBank Identifier /GB=AB029810.1 /PROTEIN_GB=BAA89490.1 /CHR=1 /FEA=Mapped Transcript /DEF=ABF-2
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058851 NCBI Caenorhabditis elegans AntiBacterial Factor related family member (abf-2) (abf-2) mRNA, complete cds. 11/11 None
SNAP00000013844 ENSEMBL cdna:SNAP chromosome:CEL140:I:3876402:3885890:-1 9/11 None
C50F2.10 ENSEMBL cdna:known chromosome:CEL140:I:3885549:3885890:-1 gene:C50F2.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058852 8/11 Cross Hyb Matching Probes None
C50F2.9 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3885549-3885994(-) 93.48 100.0
Public Domain and Genome References
Gene Title
Gene Symbol abf-2
Ensembl C50F2.10
Entrez Gene 266826 Entrez gene
SwissProt Q9NL71 EMBL-EBI
WormBase CE27876 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68258 Antibacterial factor related protein 2 [Caenorhabditis elegans] ref|NP_491252.1| AntiBacterial Factor related family member (abf-2) [Caenorhabditis elegans] dbj|BAA89490.1| ABF-2 [Caenorhabditis elegans] 7.0E-44
blast NP_001021606 T03F1.12 [Caenorhabditis elegans] gb|AAO12405.1| Hypothetical protein T03F1.12 [Caenorhabditis elegans] 4.0E-42
blast AAK68258 Antibacterial factor related protein 2 [Caenorhabditis elegans] ref|NP_491252.1| AntiBacterial Factor related family member (abf-2) [Caenorhabditis elegans] dbj|BAA89490.1| ABF-2 [Caenorhabditis elegans] 2.0E-33
blast BAA89492.1 ABF-2 [Caenorhabditis elegans] 6.0E-32
blast BAA89492.1 ABF-2 [Caenorhabditis elegans] 8.0E-32
blast CAE66644 Hypothetical protein CBG11981 [Caenorhabditis briggsae] 2.0E-30
Sequence
Target Sequence 
>C. ELEGANS:175642_S_AT
tggctgccgacatcgactttagtacttgtgccagaatggatgttcctattcttaaaaaag
cggctcaggggttgtgcattaccagctgcagtatgcaaaactgtggaaccggttcatgca
agaaacgaagcggtcgtccgacttgtgtgtgttaccggtgtgcaaatggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTGCCGACATCGACTTTAGTAC 268 543 163 Antisense
ATCGACTTTAGTACTTGTGCCAGAA 175 37 174 Antisense
GTACTTGTGCCAGAATGGATGTTCC 383 459 184 Antisense
GGCTCAGGGGTTGTGCATTACCAGC 384 537 224 Antisense
GTGCATTACCAGCTGCAGTATGCAA 461 477 236 Antisense
GTATGCAAAACTGTGGAACCGGTTC 326 455 253 Antisense
GGAACCGGTTCATGCAAGAAACGAA 497 527 267 Antisense
GAAACGAAGCGGTCGTCCGACTTGT 419 357 284 Antisense
GGTCGTCCGACTTGTGTGTGTTACC 320 501 294 Antisense
CGACTTGTGTGTGTTACCGGTGTGC 570 251 301 Antisense
GTGTGTTACCGGTGTGCAAATGGAG 177 487 309 Antisense
Sequence Source GenBank