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[175641_at]

Description g5668698 /REP_DB=GenBank Identifier /GB=AB024086.1 /PROTEIN_GB=BAA82641.1 /CHR=X /FEA=Mapped Transcript /DEF=JKK-1
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 35      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 90      6grp_total > 25      4grp_total > 22      6grp_highest_sub > 01_02      6grp_cgc > 24      6grp_high1_sub > 02      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 263.7
(3)
P 		131.1
(-1.4)
P 		81.5
(-3)
P 		197.4
(0.8)
P 		182
B 184.1
(0.4)
P 		130.2
(-2)
P 		108.6
(-3)
P 		240.5
(3)
P 		132
C 238.3
(3)
P 		148
(-1.4)
P 		115.9
(-3)
P 		219.1
(2.1)
P 		122
avr 228.7
(3) 		136.4
(-1.4) 		102
(-3) 		219
(2.5) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 219.4
(3)
P 		209.1
(2.4)
P 		136.8
(-1.7)
P 		115.5
(-3)
P 		114.7
(-3)
P 		147
(-1.1)
P 		105
B 174.1
(3)
P 		155.7
(1.5)
P 		167.5
(2.5)
P 		131
(-0.6)
P 		101.9
(-3)
P 		113.6
(-2)
P 		72
C 155.8
(0.4)
P 		207
(3)
P 		120.1
(-1.4)
P 		99.6
(-2.5)
P 		89.8
(-3)
P 		119
(-1.5)
P 		117
avr 183.1
(2.5) 		190.6
(3) 		141.5
(-0.3) 		115.4
(-2.1) 		102.1
(-3) 		126.5
(-1.3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 96
(3)
P 		28.5
(-2.4)
P 		21.3
(-3)
P 		28.9
(-2.4)
P 		75
B 58.7
(3)
P 		32.2
(-1.7)
P 		25.2
(-3)
P 		51.3
(1.7)
P 		34
C 78.9
(3)
P 		42.5
(-2.2)
P 		40.4
(-2.5)
P 		37
(-3)
P 		42
avr 77.9
(3) 		34.4
(-2.3) 		29
(-3) 		39.1
(-1.8) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 40.4
(-1.5)
P 		74.4
(3)
P 		29.8
(-2.9)
P 		29.3
(-3)
P 		34.6
(-2.3)
P 		35.8
(-2.1)
P 		45
B 60.6
(3)
P 		51.8
(1)
P 		40.7
(-1.6)
P 		34.7
(-3)
P 		41.4
(-1.4)
P 		42.4
(-1.2)
P 		26
C 57.8
(2.3)
P 		63.2
(3)
P 		30.6
(-1.5)
P 		20
(-3)
P 		29.1
(-1.7)
P 		39.8
(-0.3)
P 		43
avr 52.9
(1.3) 		63.1
(3) 		33.7
(-2) 		28
(-3) 		35
(-1.8) 		39.3
(-1.1) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175641_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19970
Sequence Type Exemplar sequence
Representative Public ID 5668698 NCBI
Target Description g5668698 /REP_DB=GenBank Identifier /GB=AB024086.1 /PROTEIN_GB=BAA82641.1 /CHR=X /FEA=Mapped Transcript /DEF=JKK-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076512 NCBI Caenorhabditis elegans JNK Kinase family member (jkk-1) (jkk-1) mRNA, complete cds. 11/11 A 
F35C8.3 ENSEMBL cdna:known chromosome:CEL140:X:5368431:5372024:1 gene:F35C8.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5368493-5372018(+) 99.59 99.59
Public Domain and Genome References
Gene Title
Gene Symbol jkk-1
Ensembl F35C8.3
Entrez Gene 180810 Entrez gene
SwissProt Q9UAH1 EMBL-EBI
WormBase CE24941 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81711 Jnk kinase protein 1 [Caenorhabditis elegans] ref|NP_508913.1| JNK Kinase family member (jkk-1) [Caenorhabditis elegans] dbj|BAA82641.1| JKK-1 [Caenorhabditis elegans] 0.0
blast CAE68744 Hypothetical protein CBG14676 [Caenorhabditis briggsae] 0.0
blast AAH68887 Map2k7-A protein [Xenopus laevis] dbj|BAB85484.1| MAPK kinase 7 [Xenopus laevis] 2.0E-62
Protein Families
Method ID Description E-Value
hanks 1.4.3 AGC group; AGC IV GPCR kinases; RhoK 6.0E-17
hanks 1.1.10 AGC group; AGC I Cyclic nucleotide regulated protein kinase (PKA & PKG); DdPK1 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.9E-54
Sequence
Target Sequence 
>C. ELEGANS:175641_AT
gaagacttttaagcaaattatcactttcgtgttctctcagaaattctcattcttttaaaa
ttgaaacgagtctgatatcatcactggtgctcttctctgcataatatttgtttctcggtt
gcttccagttcactttttgaagaaattctaggtatgatttaaaaagaaatactgggtttt
ttaaacgaacaaactaaaaatctgtccaaatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACTTTTAAGCAAATTATCACT 186 339 1463 Antisense
AAATTATCACTTTCGTGTTCTCTCA 153 117 1477 Antisense
ATCACTTTCGTGTTCTCTCAGAAAT 562 27 1482 Antisense
GTTCTCTCAGAAATTCTCATTCTTT 372 443 1493 Antisense
GAAACGAGTCTGATATCATCACTGG 451 357 1525 Antisense
TGATATCATCACTGGTGCTCTTCTC 88 565 1535 Antisense
CTGGTGCTCTTCTCTGCATAATATT 224 241 1546 Antisense
GCTCTTCTCTGCATAATATTTGTTT 358 301 1551 Antisense
TAATATTTGTTTCTCGGTTGCTTCC 52 635 1564 Antisense
TTGCTTCCAGTTCACTTTTTGAAGA 506 703 1581 Antisense
CAAACTAAAAATCTGTCCAAATGGA 482 121 1652 Antisense
Sequence Source GenBank