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[175640_at]

Description g5668696 /REP_DB=GenBank Identifier /GB=AB024085.1 /PROTEIN_GB=BAA82640.1 /CHR=4 /FEA=Mapped Transcript /DEF=JNK-1
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 15      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 40      6grp_total > 15      4grp_total > 14      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 843
1 2 3 4 range
A 823.4
(3)
P 		464.3
(-3)
P 		539.1
(-1.8)
P 		758.2
(1.9)
P 		359
B 741.2
(-1.1)
P 		469.3
(-3)
P 		479.7
(-2.9)
P 		1307
(3)
P 		838
C 796.5
(1.1)
P 		523.1
(-3)
P 		554.3
(-2.5)
P 		921.4
(3)
P 		398
avr 787
(0.5) 		485.6
(-3) 		524.4
(-2.5) 		995.5
(3) 		510

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 627
1 2 3 4 5 6 range
A 795.5
(3)
P 		711.7
(2)
P 		568.7
(0.4)
P 		377.2
(-1.8)
P 		415.9
(-1.4)
P 		277.2
(-3)
P 		518
B 904
(3)
P 		715.2
(0.8)
P 		396.9
(-3)
P 		481.1
(-2)
P 		484.9
(-2)
P 		426.6
(-2.6)
P 		507
C 745.7
(1.5)
P 		885.4
(3)
P 		435.1
(-1.9)
P 		473.3
(-1.4)
P 		328.6
(-3)
P 		346
(-2.8)
P 		557
avr 815.1
(3) 		770.8
(2.4) 		466.9
(-1.5) 		443.9
(-1.8) 		409.8
(-2.2) 		349.9
(-3) 		465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 299.8
(3)
P 		100.8
(-3)
P 		140.9
(-1.8)
P 		111
(-2.7)
P 		199
B 236.4
(1.5)
P 		115.9
(-2.8)
P 		111.2
(-3)
P 		278.5
(3)
P 		167
C 263.7
(3)
P 		150.4
(-3)
P 		193.2
(-0.7)
P 		155.4
(-2.7)
P 		113
avr 266.6
(3) 		122.4
(-3) 		148.4
(-1.9) 		181.6
(-0.5) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 146.6
(-0.4)
P 		253.1
(3)
P 		123.8
(-1.2)
P 		95.7
(-2.1)
P 		125.5
(-1.1)
P 		67.5
(-3)
P 		186
B 314.6
(3)
P 		238.1
(0.9)
P 		96.4
(-3)
P 		127.4
(-2.1)
P 		197
(-0.2)
P 		159.1
(-1.3)
P 		218
C 276.4
(3)
P 		270.2
(2.8)
P 		110.7
(-2.5)
P 		95.2
(-3)
P 		106.3
(-2.6)
P 		115.8
(-2.3)
P 		181
avr 245.9
(2.7) 		253.8
(3) 		110.3
(-2.8) 		106.1
(-3) 		142.9
(-1.5) 		114.1
(-2.7) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19862
Sequence Type Exemplar sequence
Representative Public ID 5668696 NCBI
Target Description g5668696 /REP_DB=GenBank Identifier /GB=AB024085.1 /PROTEIN_GB=BAA82640.1 /CHR=4 /FEA=Mapped Transcript /DEF=JNK-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026099(11), NM_171371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026099 NCBI Caenorhabditis elegans Jun N-terminal Kinase family member (jnk-1) (jnk-1) mRNA, complete cds. 11/11 None
NM_171371 NCBI Caenorhabditis elegans Jun N-terminal Kinase family member (jnk-1) (jnk-1) mRNA, complete cds. 11/11 A 
B0478.1a ENSEMBL cdna:known chromosome:CEL140:IV:6957625:6963700:1 gene:B0478.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6957628-6963706(+) 99.42 99.42
Public Domain and Genome References
Ensembl B0478.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98724 Jun n-terminal kinase protein 1, isoform a [Caenorhabditis elegans] ref|NP_001021270.1| Jun N-terminal Kinase family member (jnk-1) [Caenorhabditis elegans] sp|Q8WQG9|JNK1_CAEEL Stress-activated protein kinase jnk-1 dbj|BAA82640.1| JNK-1 [Caenorhabditis elegans] 0.0
blast CAE61773 Hypothetical protein CBG05733 [Caenorhabditis briggsae] 0.0
blast T30031 hypothetical protein B0478.1 - Caenorhabditis elegans 0.0
blast AAL50324 Jun n-terminal kinase protein 1, isoform b [Caenorhabditis elegans] ref|NP_741434.2| Jun N-terminal Kinase family member (jnk-1) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 3.0E-69
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-70
hanks 3.1.1 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; CDC2Hs 6.0E-71
hanks 3.1.1 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; CDC2Hs 3.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-71
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-71
Sequence
Target Sequence 
>C. ELEGANS:175640_AT
gacatttattcctgattccatgttttacggtcacatttcgatctctatgttttttcattc
gcgtaattgttttcaaatgtctccttttctgtgctcatatttctatttaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTTATTCCTGATTCCATGTTT 163 371 1428 Antisense
ATTCCTGATTCCATGTTTTACGGTC 593 5 1435 Antisense
CCTGATTCCATGTTTTACGGTCACA 391 265 1438 Antisense
TTTACGGTCACATTTCGATCTCTAT 472 673 1451 Antisense
GGTCACATTTCGATCTCTATGTTTT 663 503 1456 Antisense
GATCTCTATGTTTTTTCATTCGCGT 385 419 1467 Antisense
ATGTTTTTTCATTCGCGTAATTGTT 192 47 1474 Antisense
TTTTCATTCGCGTAATTGTTTTCAA 115 677 1479 Antisense
TTGTTTTCAAATGTCTCCTTTTCTG 382 705 1494 Antisense
TCCTTTTCTGTGCTCATATTTCTAT 81 593 1509 Antisense
TTCTGTGCTCATATTTCTATTTAAA 281 695 1514 Antisense
Sequence Source GenBank