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[175639_s_at]

Description g9800182 /REP_DB=GenBank Identifier /GB=AF149286.1 /PROTEIN_GB=AAF99085.1 /CHR=4 /FEA=Mapped Transcript /DEF=KRP95
Cluster 6grp_total > 01      4grp_total > 38      6grp_cgc > 43      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 90.3
(3)
A 		83.5
(2.5)
A 		16.3
(-2.6)
A 		11.4
(-3)
A 		79
B 56.7
(3)
A 		4.8
(-3)
A 		14.3
(-1.9)
A 		27.8
(-0.3)
A 		52
C 68.3
(3)
A 		31.6
(-2)
A 		24.1
(-3)
A 		68.4
(3)
A 		44
avr 71.8
(3) 		40
(-0.6) 		18.2
(-3) 		35.9
(-1) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 14.5
(3)
A 		12.4
(1.9)
A 		10.1
(0.8)
A 		2.6
(-3)
A 		4.2
(-2.2)
A 		10.5
(1)
A 		12
B 10.9
(3)
A 		10.2
(2.2)
A 		6.3
(-2.3)
A 		9
(0.8)
A 		5.7
(-3)
A 		5.9
(-2.8)
A 		5
C 12
(-2)
A 		49.2
(3)
A 		5.6
(-2.8)
A 		4.3
(-3)
A 		4.2
(-3)
A 		5.9
(-2.8)
A 		45
avr 12.5
(-0.6) 		23.9
(3) 		7.3
(-2.2) 		5.3
(-2.8) 		4.7
(-3) 		7.4
(-2.2) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 32.9
(3)
A 		18.1
(0.2)
A 		4.3
(-2.5)
A 		1.7
(-3)
A 		31
B 18.1
(3)
A 		1.2
(-3)
A 		3.3
(-2.3)
A 		5.9
(-1.3)
A 		17
C 22.6
(3)
A 		9.1
(-2.7)
A 		8.4
(-3)
A 		11.5
(-1.7)
A 		14
avr 24.5
(3) 		9.5
(-1.7) 		5.3
(-3) 		6.4
(-2.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.7
(0.2)
A 		4.4
(3)
A 		2.2
(-0.6)
A 		0.7
(-3)
A 		1.3
(-2)
A 		2.5
(-0.1)
A 		4
B 3.8
(3)
A 		3.4
(2)
A 		1.5
(-3)
A 		2.4
(-0.7)
A 		2.3
(-0.9)
A 		2.2
(-1.2)
A 		2
C 4.5
(-1.5)
A 		15
(3)
A 		1.4
(-2.8)
A 		0.9
(-3)
A 		1.4
(-2.8)
A 		2
(-2.5)
A 		14
avr 3.7
(-0.7) 		7.6
(3) 		1.7
(-2.6) 		1.3
(-3) 		1.7
(-2.6) 		2.2
(-2.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175639_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19852
Sequence Type Exemplar sequence
Representative Public ID 9800182 NCBI
Target Description g9800182 /REP_DB=GenBank Identifier /GB=AF149286.1 /PROTEIN_GB=AAF99085.1 /CHR=4 /FEA=Mapped Transcript /DEF=KRP95
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027968(11), NM_171407(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027968 NCBI Caenorhabditis elegans F20C5.2b (kinesin) mRNA, complete cds. 11/11 None
NM_171407 NCBI Caenorhabditis elegans F20C5.2a (kinesin) mRNA, complete cds. 11/11 A 
SNAP00000022216 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8755262:8761978:-1 11/11 None
GENEFINDER00000022226 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8755262:8761978:-1 11/11 None
F20C5.2b ENSEMBL cdna:known chromosome:CEL140:IV:8755046:8761978:-1 gene:F20C5.2 11/11 A 
F20C5.2a ENSEMBL cdna:known chromosome:CEL140:IV:8756422:8762039:-1 gene:F20C5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
AB017106 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8756522-8761393(-) 100.0 100.0
Public Domain and Genome References
Ensembl F20C5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD36488 Hypothetical protein F20C5.2b [Caenorhabditis elegans] ref|NP_001023139.1| F20C5.2b [Caenorhabditis elegans] 0.0
blast CAA92295 Hypothetical protein F20C5.2a [Caenorhabditis elegans] ref|NP_741473.1| F20C5.2a [Caenorhabditis elegans] 0.0
blast AAF99085 KRP95 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.3E-6
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023139.1 1 1107-1129
F20C5.2b 1 1107-1129
SNAP00000022216 1 1089-1111
GENEFINDER00000022226 1 1101-1123
Sequence
Target Sequence 
>C. ELEGANS:175639_S_AT
tggtgtctccgtgagcggcggaaacgggacgcctgcgacatcgcaatttttggacaaaag
actggtggcaactcctggctgtcgacggcctatgtcaatgtgtgagcggatgctcgtgga
aacagctcgagaacaattcggtgctcagaggaggcctcctatatcaggttcaggatcgtt
tgtcgaggcgacaattcccgaggagacaatccgattctgtggggagaacgttgtcgtttt
cagtgctctggaacgatttgttccagaggtgactgactcggatccgtccactttttcaaa
ctcaatgatgatgtcagcacgtcgtccatcaatcgagaatctgacaatcgacgcgtcgaa
ggttctcgttccaattctgaaccaatcgactatgatattaaaaaattcaaaaaacggtca
agcccgcaacgacacaatgccaccgaacggttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGTCTCCGTGAGCGGCGGAAAC 351 553 1842 Antisense
GGCTGTCGACGGCCTATGTCAATGT 312 539 1918 Antisense
AATTCGGTGCTCAGAGGAGGCCTCC 278 175 1976 Antisense
GAGGCCTCCTATATCAGGTTCAGGA 575 403 1992 Antisense
TGTCGAGGCGACAATTCCCGAGGAG 708 553 2022 Antisense
GTTGTCGTTTTCAGTGCTCTGGAAC 375 437 2071 Antisense
CAGAGGTGACTGACTCGGATCCGTC 202 205 2105 Antisense
ATGATGATGTCAGCACGTCGTCCAT 461 45 2146 Antisense
GAGAATCTGACAATCGACGCGTCGA 286 391 2176 Antisense
TCGAAGGTTCTCGTTCCAATTCTGA 360 601 2197 Antisense
GACACAATGCCACCGAACGGTTCGA 678 365 2272 Antisense
Sequence Source GenBank