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[175637_at]

Description g5001729 /REP_DB=GenBank Identifier /GB=AF129110.1 /PROTEIN_GB=AAD37120.1 /CHR=4 /FEA=Mapped Transcript /DEF=Pct-1
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 91      6grp_total > 39      4grp_total > 14      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 151.4
(-3)
P 		202.7
(0.3)
P 		192.9
(-0.3)
P 		243.6
(3)
P 		92
B 232.3
(1.6)
P 		183.7
(-1.2)
P 		150.8
(-3)
P 		257.7
(3)
P 		107
C 284.5
(3)
P 		163.3
(-3)
P 		173.3
(-2.5)
P 		210.8
(-0.6)
P 		121
avr 222.7
(1.6) 		183.2
(-2) 		172.3
(-3) 		237.4
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 238.5
(1)
P 		183.8
(-0.9)
P 		154.7
(-1.9)
P 		124.6
(-3)
P 		294.1
(3)
P 		248.5
(1.4)
P 		170
B 239.4
(0.9)
P 		154.5
(-2.8)
P 		149.4
(-3)
P 		185.8
(-1.4)
P 		286.6
(3)
P 		256.6
(1.7)
P 		137
C 314.2
(2.1)
P 		166.6
(-1.8)
P 		122.6
(-3)
P 		239.7
(0.1)
P 		346.5
(3)
P 		209.9
(-0.7)
P 		224
avr 264
(1.4) 		168.3
(-2.1) 		142.2
(-3) 		183.4
(-1.5) 		309.1
(3) 		238.3
(0.5) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 55.1
(3)
P 		44
(-0.4)
P 		50.4
(1.5)
P 		35.7
(-3)
P 		19
B 74.1
(3)
P 		45.4
(-1.4)
P 		34.9
(-3)
P 		54.9
(0.1)
P 		39
C 94.2
(3)
P 		47
(-1.8)
P 		60.4
(-0.5)
P 		35.5
(-3)
P 		59
avr 74.5
(3) 		45.5
(-2.4) 		48.6
(-1.8) 		42
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 44
(-1.7)
P 		65.4
(0.6)
P 		33.7
(-2.8)
P 		31.6
(-3)
P 		88.7
(3)
P 		60.5
(0)
P 		57
B 83.3
(0.5)
P 		51.4
(-1.9)
P 		36.3
(-3)
P 		49.2
(-2)
P 		116.4
(3)
P 		95.7
(1.4)
P 		80
C 116.4
(3)
P 		50.8
(-1.6)
P 		31.2
(-3)
P 		48.2
(-1.8)
P 		112.1
(2.7)
P 		70.3
(-0.2)
P 		85
avr 81.2
(1) 		55.9
(-1.2) 		33.7
(-3) 		43
(-2.2) 		105.7
(3) 		75.5
(0.5) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19842
Sequence Type Exemplar sequence
Representative Public ID 5001729 NCBI
Target Description g5001729 /REP_DB=GenBank Identifier /GB=AF129110.1 /PROTEIN_GB=AAD37120.1 /CHR=4 /FEA=Mapped Transcript /DEF=Pct-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068971(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068971 NCBI Caenorhabditis elegans PCTAIRE class cell cycle kinase family member (pct-1) (pct-1) mRNA, complete cds. 11/11 A 
C07G1.3a ENSEMBL cdna:known chromosome:CEL140:IV:8176469:8188860:1 gene:C07G1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177615 3 1 NM_068971 175637_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8177086-8188869(+) 100.0 100.0
Public Domain and Genome References
Ensembl C07G1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00656 Pctaire class cell cycle kinase protein 1, isoform a [Caenorhabditis elegans] ref|NP_501372.1| PCTAIRE class cell cycle kinase family member (pct-1) [Caenorhabditis elegans] gb|AAD37120.1| Pct-1 [Caenorhabditis elegans] 0.0
blast CAE58428 Hypothetical protein CBG01560 [Caenorhabditis briggsae] 0.0
blast AAN84880 Pctaire class cell cycle kinase protein 1, isoform c [Caenorhabditis elegans] ref|NP_001021312.1| PCTAIRE class cell cycle kinase family member (pct-1) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 7.0E-90
hanks 3.1.7 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; PCTAIRE1 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 8.7E-85
Sequence
Target Sequence 
>C. ELEGANS:175637_AT
tttccccatttcatctcagattgtgttgcacttttacgggttcttgtcaaccaattccga
ttcgtttcctcccaaccaaaatgtccttccaatgcggtcacttatagatcaagatgttta
tgaaacatgtttcctaataatttattgtgtaatattttctcttcatatcccgagactcca
tcattcttcttagaatttttcccgttgtttcccgtaaccagtaatagcgattttcaaatt
tacattttctgttcataaatcacacaaaaatctacaaaaaatcatctcataatctcaatt
tgttcccaaaaagcacacagaaccattttttttgctatttattttagccgttattcttat
tgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCCCATTTCATCTCAGATTGTG 120 671 1808 Antisense
TTCATCTCAGATTGTGTTGCACTTT 504 687 1817 Antisense
TCAACCAATTCCGATTCGTTTCCTC 423 631 1854 Antisense
TTATTGTGTAATATTTTCTCTTCAT 426 679 1949 Antisense
ATATTTTCTCTTCATATCCCGAGAC 692 17 1959 Antisense
GTTCATAAATCACACAAAAATCTAC 314 441 2058 Antisense
ATTTGTTCCCAAAAAGCACACAGAA 27 19 2105 Antisense
CACACAGAACCATTTTTTTTGCTAT 149 193 2121 Antisense
CAGAACCATTTTTTTTGCTATTTAT 316 205 2125 Antisense
TATTTATTTTAGCCGTTATTCTTAT 404 661 2143 Antisense
TATTTTAGCCGTTATTCTTATTGTA 188 663 2147 Antisense
Sequence Source GenBank