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[175636_at] cyclin

Description g706923 /REP_DB=GenBank Identifier /GB=U20903.1 /PROTEIN_GB=AAA84394.1 /CHR=4 /FEA=Mapped Transcript /DEF=cyclin B
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 88      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 95      6grp_total > 88      4grp_total > 49      6grp_highest_sub > Da      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 152.7
(-0.6)
P 		236.9
(2.5)
P 		250.7
(3)
P 		88
(-3)
P 		163
B 107.8
(-3)
P 		312.9
(3)
P 		221.9
(0.3)
P 		187.5
(-0.7)
P 		205
C 128.1
(-2)
P 		250.5
(2.3)
P 		270.4
(3)
P 		98.2
(-3)
P 		172
avr 129.5
(-2.8) 		266.8
(3) 		247.7
(2.2) 		124.6
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1721
1 2 3 4 5 6 range
A 176.3
(-2.8)
P 		209.3
(-2.6)
P 		124.9
(-3)
P 		206.1
(-2.6)
P 		959.2
(0.8)
P 		1444
(3)
P 		1319
B 238.4
(-2.7)
P 		178.7
(-3)
P 		168.7
(-3)
P 		251.4
(-2.7)
P 		748.3
(-0.7)
P 		1712
(3)
P 		1543
C 209.5
(-2.8)
P 		171.5
(-2.9)
P 		140.8
(-3)
P 		222.9
(-2.7)
P 		832.9
(-0.6)
P 		1846.2
(3)
P 		1705
avr 208.1
(-2.8) 		186.5
(-2.8) 		144.8
(-3) 		226.8
(-2.7) 		846.8
(-0.2) 		1667.4
(3) 		1523
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 55.6
(1.9)
P 		51.4
(1.4)
P 		65.5
(3)
P 		12.9
(-3)
P 		53
B 34.4
(-3)
P 		77.3
(3)
P 		51.4
(-0.6)
P 		40
(-2.2)
P 		43
C 42.4
(-1)
P 		72
(1.3)
P 		94.2
(3)
P 		16.6
(-3)
P 		78
avr 44.1
(-0.3) 		66.9
(2.6) 		70.4
(3) 		23.2
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 611
1 2 3 4 5 6 range
A 32.5
(-2.9)
P 		74.4
(-2.1)
P 		27.2
(-3)
P 		52.3
(-2.5)
P 		289.4
(1.8)
P 		351.6
(3)
P 		324
B 82.9
(-2.6)
P 		59.5
(-2.8)
P 		41
(-3)
P 		66.6
(-2.7)
P 		304
(-0.4)
P 		638.4
(3)
P 		597
C 77.6
(-2.6)
P 		52.3
(-2.8)
P 		35.8
(-3)
P 		44.8
(-2.9)
P 		269.5
(-0.6)
P 		618
(3)
P 		582
avr 64.3
(-2.6) 		62.1
(-2.7) 		34.7
(-3) 		54.6
(-2.8) 		287.6
(0) 		536
(3) 		501
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19845
Sequence Type Exemplar sequence
Representative Public ID 706923 NCBI
Target Description g706923 /REP_DB=GenBank Identifier /GB=U20903.1 /PROTEIN_GB=AAA84394.1 /CHR=4 /FEA=Mapped Transcript /DEF=cyclin B
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069586(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069586 NCBI Caenorhabditis elegans ZC168.4 (cyclin) mRNA, complete cds. 11/11 A 
ZC168.4.3 ENSEMBL cdna:known chromosome:CEL140:IV:10735314:10737147:1 gene:ZC168.4 11/11 A 
ZC168.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:10735327:10737147:1 gene:ZC168.4 11/11 A 
ZC168.4.4 ENSEMBL cdna:known chromosome:CEL140:IV:10735412:10737147:1 gene:ZC168.4 11/11 A 
ZC168.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:10735414:10737147:1 gene:ZC168.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10735417-10737113(+) 100.0 100.0
Public Domain and Genome References
Gene Title cyclin
Gene Symbol cyb-1
Ensembl ZC168.4
Entrez Gene 177965 Entrez gene
SwissProt Q10653 EMBL-EBI
WormBase CE06570 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16851_S_AT cyclin 3a (CYC3a) at
ATH1-121501:246938_AT cyclin 3a (CYC3a) at
CANINE_2:CFAAFFX.12419.1.S1_S_AT similar to G2/mitotic-specific cyclin B1 cfa
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94384 Hypothetical protein ZC168.4 [Caenorhabditis elegans] ref|NP_501987.1| ZC168.4 [Caenorhabditis elegans] sp|Q10653|CCNB1_CAEEL G2/mitotic-specific cyclin B1 gb|AAA84394.1| cyclin B 0.0
blast CAE70859 Hypothetical protein CBG17647 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 1.8E-21
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 5.2E-57
Sequence
Target Sequence 
>C. ELEGANS:175636_AT
tcttgattcttatgtttcttccttcattgcttttcttttcggctcctttccattttttaa
ctcctccagtcgtttccacgtcaatctggtcacacccgtacattgattgtaaattggtga
acattcgttgagcgaccatacaccacctcccatattattcaatttgtccattttgaaatt
taaaatttcactaaaaatttttatcacaacttttcgcgccctcttttgtatcgatctcgt
atttaattattgaaaccacactgctgtaagactcaccgtcctcatctctgttgttgtaac
tagaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGATTCTTATGTTTCTTCCTTC 69 619 1156 Antisense
TGGTCACACCCGTACATTGATTGTA 498 551 1242 Antisense
AATTGGTGAACATTCGTTGAGCGAC 606 177 1267 Antisense
ATTCGTTGAGCGACCATACACCACC 529 9 1278 Antisense
CACCACCTCCCATATTATTCAATTT 105 203 1296 Antisense
CTCCCATATTATTCAATTTGTCCAT 590 233 1302 Antisense
CCCTCTTTTGTATCGATCTCGTATT 692 257 1374 Antisense
GTATCGATCTCGTATTTAATTATTG 481 453 1383 Antisense
TAATTATTGAAACCACACTGCTGTA 244 635 1399 Antisense
AAACCACACTGCTGTAAGACTCACC 380 125 1408 Antisense
CATCTCTGTTGTTGTAACTAGAAGG 270 213 1438 Antisense
Sequence Source GenBank