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[175634_at]

Description g6969441 /REP_DB=GenBank Identifier /GB=AF220265.1 /PROTEIN_GB=AAF33782.1 /CHR=X /FEA=Mapped Transcript /DEF=RGS-2
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 50      6grp_total > 06      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 852
1 2 3 4 range
A 1114.6
(3)
P 		426.5
(-2.1)
P 		303.9
(-3)
P 		383.9
(-2.4)
P 		811
B 1130.7
(3)
P 		483.8
(-1.6)
P 		278.3
(-3)
P 		618.9
(-0.6)
P 		852
C 1106.9
(3)
P 		436.6
(-2.3)
P 		344.7
(-3)
P 		583
(-1.1)
P 		762
avr 1117.4
(3) 		449
(-2) 		309
(-3) 		528.6
(-1.4) 		808

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 724
1 2 3 4 5 6 range
A 942.5
(3)
P 		517.9
(-0.7)
P 		407
(-1.6)
P 		312.3
(-2.5)
P 		372.6
(-1.9)
P 		249.9
(-3)
P 		693
B 808.4
(3)
P 		516.4
(0)
P 		441.7
(-0.7)
P 		376.8
(-1.4)
P 		218.3
(-3)
P 		273
(-2.4)
P 		590
C 692.7
(3)
P 		496.8
(0.3)
P 		392.6
(-1.2)
P 		448.4
(-0.4)
P 		296.9
(-2.5)
P 		259.7
(-3)
P 		433
avr 814.5
(3) 		510.4
(-0.3) 		413.8
(-1.3) 		379.2
(-1.7) 		295.9
(-2.6) 		260.9
(-3) 		554
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 405.8
(3)
P 		92.6
(-2.4)
P 		79.4
(-2.6)
P 		56.2
(-3)
P 		350
B 360.6
(3)
P 		119.5
(-1.9)
P 		64.5
(-3)
P 		131.9
(-1.6)
P 		296
C 366.4
(3)
P 		125.5
(-2.4)
P 		120.1
(-2.5)
P 		98.3
(-3)
P 		268
avr 377.6
(3) 		112.5
(-2.5) 		88
(-3) 		95.5
(-2.8) 		290

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 173.7
(2.5)
P 		184.2
(3)
P 		88.6
(-1.6)
P 		79.2
(-2.1)
P 		112.4
(-0.5)
P 		60.8
(-3)
P 		123
B 281.3
(3)
P 		171.9
(-0.4)
P 		107.3
(-2.4)
P 		99.8
(-2.7)
P 		88.7
(-3)
P 		101.8
(-2.6)
P 		193
C 256.7
(3)
P 		151.6
(-0.7)
P 		99.9
(-2.5)
P 		90.2
(-2.9)
P 		96.1
(-2.7)
P 		86.9
(-3)
P 		170
avr 237.2
(3) 		169.2
(0.4) 		98.6
(-2.4) 		89.7
(-2.7) 		99.1
(-2.4) 		83.2
(-3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20023
Sequence Type Exemplar sequence
Representative Public ID 6969441 NCBI
Target Description g6969441 /REP_DB=GenBank Identifier /GB=AF220265.1 /PROTEIN_GB=AAF33782.1 /CHR=X /FEA=Mapped Transcript /DEF=RGS-2
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077723 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-2) (rgs-2) mRNA, complete cds. 11/11 A 
F16H9.1a ENSEMBL cdna:known chromosome:CEL140:X:12721766:12728308:1 gene:F16H9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181414 2 1 NM_077723 175634_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12721765-12728308(+) 100.0 100.0
Public Domain and Genome References
Ensembl F16H9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90295 Hypothetical protein F16H9.1a [Caenorhabditis elegans] emb|CAA91803.1| Hypothetical protein F16H9.1a [Caenorhabditis elegans] ref|NP_510124.2| Regulator of G protein Signaling family member (rgs-2) [Caenorhabditis elegans] gb|AAF33782.1| RGS-2 [Caenorhabditis elegans] sp|P49808|RGS2_CAEEL Regulator of G-protein signaling rgs-2 7.0E-94
blast CAB54219 Hypothetical protein F16H9.1b [Caenorhabditis elegans] emb|CAB54230.1| Hypothetical protein F16H9.1b [Caenorhabditis elegans] ref|NP_001024586.1| Regulator of G protein Signaling family member (rgs-2) [Caenorhabditis elegans] 9.0E-84
blast CAE57222 Hypothetical protein CBG00085 [Caenorhabditis briggsae] 6.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR000342 EMBL-EBI Regulator of G protein 6.6E-57
Sequence
Target Sequence 
>C. ELEGANS:175634_AT
gagccatctatttttcagggttactttcttcttaaaaaacaaaaatgacacaaaaaactt
ttttttcattcacttctccaagaattttcagtctcttttttgttatccttctgttttacg
gaccacaaagatttttccaactacttttcccccaaatcaagtgtaacactaatatcaact
ttttgctacaggcgttttccaatgtagtgcaccattttccaatgtagtgcttttaattaa
caaatgtaaaaattgttttttttctcacggaaatatattcacccaacgctaaactatttt
tccgcatcatcccgtccctaaattcaatgtgatatgaattttactgcttattaatgtttt
ccaaagttgtcatcaatttctcacattatatattctttgcgaaacctttttaattctact
atataatgtctgaaattcattctgaagcttagcctcttcaccatgatctcttgctattat
cccttcagcaactcttctttgtccgatttttcattgatccggtgttccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCATCTATTTTTCAGGGTTACT 495 385 1004 Antisense
TCAGTCTCTTTTTTGTTATCCTTCT 41 623 1091 Antisense
TTATCCTTCTGTTTTACGGACCACA 257 673 1106 Antisense
AGGCGTTTTCCAATGTAGTGCACCA 140 55 1193 Antisense
CAACGCTAAACTATTTTTCCGCATC 522 185 1287 Antisense
ATCATCCCGTCCCTAAATTCAATGT 194 29 1309 Antisense
TTCTGAAGCTTAGCCTCTTCACCAT 7 691 1443 Antisense
TCTTCACCATGATCTCTTGCTATTA 168 617 1458 Antisense
TGCTATTATCCCTTCAGCAACTCTT 566 577 1475 Antisense
ACTCTTCTTTGTCCGATTTTTCATT 101 101 1494 Antisense
ATTTTTCATTGATCCGGTGTTCCTA 535 13 1509 Antisense
Sequence Source GenBank