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[175631_s_at]

Description g2335195 /REP_DB=GenBank Identifier /GB=AF013489.1 /PROTEIN_GB=AAC47728.1 /CHR=X /FEA=Mapped Transcript /DEF=MOM-1
Cluster 6grp_total > 79      4grp_total > 13      6grp_cgc > 68      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 50.2
(-3)
A 		68.7
(-0.1)
A 		52.1
(-2.7)
A 		88.8
(3)
P 		39
B 82.4
(0.8)
P 		52.2
(-2.4)
M 		46.1
(-3)
A 		102.8
(3)
P 		57
C 79.7
(2.1)
P 		36
(-2.9)
A 		35.3
(-3)
A 		87.4
(3)
P 		52
avr 70.8
(0.3) 		52.3
(-2) 		44.5
(-3) 		93
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 72.9
(-1.4)
A 		57.4
(-3)
A 		63.8
(-2.4)
P 		75.2
(-1.2)
A 		116.5
(3)
M 		95.8
(0.9)
P 		59
B 76.9
(0.4)
P 		91.4
(2.6)
P 		55.3
(-3)
A 		82.9
(1.3)
A 		64.5
(-1.6)
A 		93.9
(3)
P 		39
C 51.3
(-3)
M 		85
(2.2)
P 		71.9
(0.2)
A 		73.6
(0.4)
A 		62.3
(-1.3)
A 		90.2
(3)
P 		39
avr 67
(-2.3) 		77.9
(-0.1) 		63.7
(-3) 		77.2
(-0.3) 		81.1
(0.5) 		93.3
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 18.3
(3)
A 		14.9
(-0.8)
A 		13.6
(-2.3)
A 		13
(-3)
P 		5
B 26.3
(3)
P 		12.9
(-2.2)
M 		10.7
(-3)
A 		21.9
(1.3)
P 		16
C 26.4
(3)
P 		10.3
(-3)
A 		12.3
(-2.3)
A 		14.7
(-1.4)
P 		16
avr 23.7
(3) 		12.7
(-2.7) 		12.2
(-3) 		16.5
(-0.8) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 13.4
(-3)
A 		20.4
(-1.1)
A 		13.9
(-2.9)
P 		19.1
(-1.4)
A 		35.1
(3)
M 		23.3
(-0.3)
P 		22
B 26.7
(0.7)
P 		30.4
(1.7)
P 		13.4
(-3)
A 		22
(-0.6)
A 		26.2
(0.6)
A 		35
(3)
P 		22
C 19
(-1.4)
M 		25.9
(1.3)
P 		18.3
(-1.6)
A 		14.8
(-3)
A 		20.2
(-0.9)
A 		30.2
(3)
P 		15
avr 19.7
(-1.1) 		25.6
(1.4) 		15.2
(-3) 		18.6
(-1.6) 		27.2
(2) 		29.5
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175631_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19993
Sequence Type Exemplar sequence
Representative Public ID 2335195 NCBI
Target Description g2335195 /REP_DB=GenBank Identifier /GB=AF013489.1 /PROTEIN_GB=AAC47728.1 /CHR=X /FEA=Mapped Transcript /DEF=MOM-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076653(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076653 NCBI Caenorhabditis elegans More Of MS family member (mom-1) (mom-1) mRNA, complete cds. 11/11 None
GENEFINDER00000003226 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6293083:6297949:1 11/11 None
T07H6.2 ENSEMBL cdna:known chromosome:CEL140:X:6293083:6298151:1 gene:T07H6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003219 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6293082-6298151(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mom-1
Ensembl T07H6.2
Entrez Gene 180904 Entrez gene
SwissProt Q22329 EMBL-EBI
WormBase CE25982 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586371_AT similar to porcupine isoform C cfa
CANINE_2:CFA.9292.1.A1_AT similar to porcupine isoform C cfa
CANINE_2:CFA.9292.1.A1_S_AT similar to porcupine isoform C cfa
DROSOPHILA_2:1636527_AT porcupine dm
DROSGENOME1:143540_AT porcupine dm
HG-U133_PLUS_2:219483_S_AT porcupine homolog (Drosophila) hs
HG-U133A_2:219483_S_AT porcupine homolog (Drosophila) hs
HG-U133A:219483_S_AT porcupine homolog (Drosophila) hs
HG-FOCUS:219483_S_AT porcupine homolog (Drosophila) hs
HU35KSUBB:RC_AA010594_S_AT porcupine homolog (Drosophila) hs
U133_X3P:G12642982_3P_A_AT porcupine homolog (Drosophila) hs
MOE430A:1424220_A_AT porcupine homolog (Drosophila) mm
MOUSE430A_2:1424220_A_AT porcupine homolog (Drosophila) mm
MOUSE430_2:1424220_A_AT porcupine homolog (Drosophila) mm
MG-U74CV2:165785_F_AT porcupine homolog (Drosophila) mm
MOE430B:1438753_AT Porcupine homolog (Drosophila) (Porcn), transcript variant Mporc-d, mRNA mm
MOUSE430_2:1438753_AT Porcupine homolog (Drosophila) (Porcn), transcript variant Mporc-d, mRNA mm
RG-U34C:RC_AI101590_AT similar to porcupine-D rn
RAE230A:1374175_AT similar to porcupine-D rn
RAT230_2:1374175_AT similar to porcupine-D rn
RAE230B:1397965_AT similar to porcupine-D rn
RAT230_2:1397965_AT similar to porcupine-D rn
Protein Similarities
Method ID Description E-Value
blast AAA96226 More of ms protein 1 [Caenorhabditis elegans] ref|NP_509054.1| More Of MS family member (mom-1) [Caenorhabditis elegans] gb|AAC47728.1| MOM-1 [Caenorhabditis elegans] 0.0
blast CAE61233 Hypothetical protein CBG05032 [Caenorhabditis briggsae] 1.0E-160
blast CAE61233 Hypothetical protein CBG05032 [Caenorhabditis briggsae] 1.0E-155
blast NP_956143 porcupine homolog [Danio rerio] gb|AAH44156.1| Porcupine homolog [Danio rerio] 4.0E-38
blast NP_956143 porcupine homolog [Danio rerio] gb|AAH44156.1| Porcupine homolog [Danio rerio] 3.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 6.9E-10
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 6.9E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509054.1 9 49-71,83-105,125-147,160-181,201-223,244-266,322-344,381-400,420-439
T07H6.2 9 49-71,83-105,125-147,160-181,201-223,244-266,322-344,381-400,420-439
GENEFINDER00000003226 9 24-46,87-109,129-151,199-221,241-263,284-306,362-384,421-440,460-479
Sequence
Target Sequence 
>C. ELEGANS:175631_S_AT
ggttgttcaattccactgcatgtaacgttttcttcacgtttgcagtcagctcacttttgc
acggtcttgacttccaaatgaccattacactattggctcttggttttattgcctattcgg
aaactgttttccgaaaacgactttctgcccgatactcaatgtgtgttgctgccaaagcct
gccctgtccgttcaaacagtctttcctgcaagcacagacactcaaacaaaacaggacgtg
ctttgatcatcaatttgttcttccttatgctttccatgtaccatcttgtgttcactggaa
tgacgttcaccgacgactattctgcaattggctatccttttgatcacgcctggaagattt
ggggatctcattactattcgagtttcatgatttctttcctatttcttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGTTCAATTCCACTGCATGTAA 133 509 914 Antisense
TTTCTTCACGTTTGCAGTCAGCTCA 102 673 942 Antisense
ACTTTTGCACGGTCTTGACTTCCAA 535 101 966 Antisense
ATTACACTATTGGCTCTTGGTTTTA 394 13 997 Antisense
TTCTGCCCGATACTCAATGTGTGTT 114 693 1056 Antisense
AATGTGTGTTGCTGCCAAAGCCTGC 492 163 1071 Antisense
GTCCGTTCAAACAGTCTTTCCTGCA 200 475 1099 Antisense
TCCATGTACCATCTTGTGTTCACTG 655 589 1186 Antisense
CGTTCACCGACGACTATTCTGCAAT 511 247 1217 Antisense
TTGGCTATCCTTTTGATCACGCCTG 638 707 1241 Antisense
TCATGATTTCTTTCCTATTTCTTGC 115 623 1298 Antisense
Sequence Source GenBank