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[175628_at] Sodium/phosphate cotransporter

Description g3777605 /REP_DB=GenBank Identifier /GB=AF095787.1 /PROTEIN_GB=AAC64972.1 /CHR=3 /FEA=Mapped Transcript /DEF=EAT-4
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 70      6grp_total > 07      4grp_total > 38      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 749
1 2 3 4 range
A 906.1
(3)
P 		480.9
(-1.1)
P 		285
(-3)
P 		618.2
(0.2)
P 		621
B 1034.3
(3)
P 		512.3
(-1.7)
P 		369.2
(-3)
P 		579.9
(-1.1)
P 		665
C 996.8
(3)
P 		455
(-1.9)
P 		335.8
(-3)
P 		557.3
(-1)
P 		661
avr 979.1
(3) 		482.7
(-1.6) 		330
(-3) 		585.1
(-0.6) 		649

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 642
1 2 3 4 5 6 range
A 646.3
(3)
P 		319.1
(-0.6)
P 		198.5
(-1.9)
P 		180.5
(-2.1)
P 		170.7
(-2.2)
P 		99.5
(-3)
P 		547
B 741.4
(3)
P 		324.1
(-1.2)
P 		164.9
(-2.8)
P 		154.2
(-2.9)
P 		144.3
(-3)
P 		140.5
(-3)
P 		601
C 643.7
(3)
P 		292.2
(-1)
P 		163.4
(-2.5)
P 		148.8
(-2.6)
P 		116.7
(-3)
P 		154
(-2.6)
P 		527
avr 677.1
(3) 		311.8
(-1) 		175.6
(-2.5) 		161.2
(-2.7) 		143.9
(-2.9) 		131.3
(-3) 		546
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 329.9
(3)
P 		104.4
(-2.3)
P 		74.5
(-3)
P 		90.5
(-2.6)
P 		255
B 329.8
(3)
P 		126.5
(-2)
P 		85.5
(-3)
P 		123.6
(-2.1)
P 		244
C 330
(3)
P 		130.8
(-2.1)
P 		117
(-2.4)
P 		94
(-3)
P 		236
avr 329.9
(3) 		120.6
(-2.3) 		92.3
(-3) 		102.7
(-2.7) 		238

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 119.1
(3)
P 		113.5
(2.6)
P 		43.2
(-1.8)
P 		45.8
(-1.6)
P 		51.5
(-1.3)
P 		24.2
(-3)
P 		95
B 258
(3)
P 		107.9
(-1.1)
P 		40
(-3)
P 		40.8
(-3)
P 		58.6
(-2.5)
P 		52.4
(-2.7)
P 		218
C 238.6
(3)
P 		89.2
(-1.3)
P 		41.6
(-2.7)
P 		29.9
(-3)
P 		37.8
(-2.8)
P 		51.5
(-2.4)
P 		209
avr 205.2
(3) 		103.5
(-0.7) 		41.6
(-2.9) 		38.8
(-3) 		49.3
(-2.6) 		42.7
(-2.9) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175628_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19793
Sequence Type Exemplar sequence
Representative Public ID 3777605 NCBI
Target Description g3777605 /REP_DB=GenBank Identifier /GB=AF095787.1 /PROTEIN_GB=AAC64972.1 /CHR=3 /FEA=Mapped Transcript /DEF=EAT-4
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066622 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-4) (eat-4) mRNA, complete cds. 11/11 A 
ZK512.6 ENSEMBL cdna:known chromosome:CEL140:III:9136822:9141728:1 gene:ZK512.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9136824-9141724(+) 92.93 100.0
Public Domain and Genome References
Gene Title Sodium/phosphate cotransporter
Gene Symbol eat-4
Ensembl ZK512.6
Entrez Gene 176291 Entrez gene
SwissProt P34644 EMBL-EBI
WormBase CE01109 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597604_AT similar to solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 cfa
CANINE_2:CFAAFFX.6443.1.S1_AT similar to solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 cfa
CANINE_2:CFAAFFX.6443.1.S1_S_AT similar to solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 cfa
DROSOPHILA_2:1632620_AT Vesicular glutamate transporter dm
DROSGENOME1:145640_AT Vesicular glutamate transporter dm
HG-U133_PLUS_2:204230_S_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
HG-U133A:204230_S_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
HG-FOCUS:204230_S_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
HG-U133A_2:204230_S_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
U133_X3P:G9945321_3P_A_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
U133_X3P:HS.6535.0.S2_3P_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
HG-U133A_2:204229_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
HG-U133_PLUS_2:204229_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
HG-U133A:204229_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
HG-U95AV2:36567_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
HG-U95AV2:36568_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
HG-U95E:67416_AT Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
HU35KSUBA:W26981_AT Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 hs
RAE230A:1368986_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 rn
RAT230_2:1368986_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 rn
RAE230A:1368987_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 rn
RAT230_2:1368987_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 rn
RG-U34A:RC_AI144756_AT solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 rn
Protein Similarities
Method ID Description E-Value
blast CAA80150 Hypothetical protein ZK512.6 [Caenorhabditis elegans] ref|NP_499023.3| EATing: abnormal pharyngeal pumping family member (eat-4) [Caenorhabditis elegans] sp|P34644|YOQ6_CAEEL Hypothetical protein ZK512.6 in chromosome III 0.0
blast AAC64972 EAT-4 [Caenorhabditis elegans] 0.0
blast CAE62654 Hypothetical protein CBG06792 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499023.3 12 71-93,126-143,150-167,177-199,212-234,239-261,306-325,340-362,382-401,405-427,432-454,469-491
ZK512.6 12 71-93,126-143,150-167,177-199,212-234,239-261,306-325,340-362,382-401,405-427,432-454,469-491
Sequence
Target Sequence 
>C. ELEGANS:175628_AT
taacgtctagttaggataccttctaaaaattttaatttatttatttaattctctcagtta
ttcctaatatcttatgttaacttaagttctattgcctagttgcgaaaaaccagaactaca
ataccaggtctcaaagcgatcgattttctcaaacttacaacatcttcaaggattcctgta
gttgctaacgtcttttcacccgttttttcaaatttattgaaacaaatttttttgaagcaa
cgggagaaaaactttagcaactacagtacttaaaggcgcacgctattttgagattcaaaa
aatcgatcgcttcgagaccctggagcaaaattcgctaaattagcatctggataatacaaa
agcaagaatcagttgcgattgaaacttttttatttaattcttcttgcgatctcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACGTCTAGTTAGGATACCTTCTA 592 637 1744 Antisense
AATTCTCTCAGTTATTCCTAATATC 260 177 1790 Antisense
TTAAGTTCTATTGCCTAGTTGCGAA 287 683 1825 Antisense
ACCAGAACTACAATACCAGGTCTCA 392 85 1852 Antisense
GGTCTCAAAGCGATCGATTTTCTCA 145 503 1870 Antisense
TTTTCTCAAACTTACAACATCTTCA 390 677 1887 Antisense
ACAACATCTTCAAGGATTCCTGTAG 314 113 1900 Antisense
TGTAGTTGCTAACGTCTTTTCACCC 536 557 1920 Antisense
AAGGCGCACGCTATTTTGAGATTCA 599 161 2016 Antisense
TCGCTTCGAGACCCTGGAGCAAAAT 637 599 2050 Antisense
ATTTAATTCTTCTTGCGATCTCATA 57 17 2135 Antisense
Sequence Source GenBank