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[175627_s_at]

Description g3047190 /REP_DB=GenBank Identifier /GB=AF031835.1 /PROTEIN_GB=AAC13671.1 /CHR=3 /FEA=Mapped Transcript /DEF=GLY5a
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 75      6grp_total > 82      4grp_total > 60      6grp_highest_sub > 04_05      6grp_cgc > 74      6grp_high1_sub > 02_03_04_05      6grp_cgc_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 782.3
(3)
P 		669
(0.8)
P 		758
(2.5)
P 		475.4
(-3)
P 		307
B 781.9
(-0.4)
P 		766
(-0.7)
P 		950.6
(3)
P 		652.6
(-3)
P 		298
C 688.1
(-1.3)
P 		750
(-0.2)
P 		944.1
(3)
P 		582.7
(-3)
P 		361
avr 750.8
(0.5) 		728.3
(0) 		884.2
(3) 		570.2
(-3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 932.1
(-0.4)
P 		940.3
(-0.3)
P 		898.4
(-0.9)
P 		845.4
(-1.7)
P 		1159.7
(3)
P 		758.1
(-3)
P 		402
B 845
(-2)
P 		1008.1
(0.5)
P 		1162.8
(3)
P 		1052.5
(1.3)
P 		942.1
(-0.5)
P 		784.2
(-3)
P 		379
C 864.4
(-3)
P 		890.4
(-0.6)
P 		922.4
(2.3)
P 		888
(-0.9)
P 		930.4
(3)
P 		918.2
(1.9)
P 		66
avr 880.5
(-1.1) 		946.3
(1) 		994.5
(2.5) 		928.6
(0.4) 		1010.7
(3) 		820.2
(-3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 284.9
(3)
P 		145.2
(-0.9)
P 		198.1
(0.6)
P 		69.6
(-3)
P 		215
B 249.3
(3)
P 		189.2
(-0.3)
P 		220.3
(1.4)
P 		139.1
(-3)
P 		110
C 227.8
(0.4)
P 		215.6
(0.1)
P 		329
(3)
P 		98.2
(-3)
P 		231
avr 254
(3) 		183.3
(0.2) 		249.1
(2.8) 		102.3
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 171.8
(-3)
P 		334.4
(2.5)
P 		195.6
(-2.2)
P 		214.4
(-1.6)
P 		350
(3)
P 		184.6
(-2.6)
P 		178
B 294
(-2.1)
P 		335.6
(0.3)
P 		282.4
(-2.8)
P 		278.8
(-3)
P 		382.7
(3)
P 		292.4
(-2.2)
P 		104
C 320.4
(3)
P 		271.7
(0.9)
P 		234.8
(-0.6)
P 		178.6
(-3)
P 		301.1
(2.2)
P 		307.4
(2.4)
P 		142
avr 262.1
(-1.1) 		313.9
(1.5) 		237.6
(-2.3) 		223.9
(-3) 		344.6
(3) 		261.5
(-1.1) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175627_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19777
Sequence Type Exemplar sequence
Representative Public ID 3047190 NCBI
Target Description g3047190 /REP_DB=GenBank Identifier /GB=AF031835.1 /PROTEIN_GB=AAC13671.1 /CHR=3 /FEA=Mapped Transcript /DEF=GLY5a
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027680(11), NM_001027679(11), NM_001027681(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027680 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-5) (gly-5) mRNA, complete cds. 11/11 None
NM_001027679 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-5) (gly-5) mRNA, complete cds. 11/11 None
NM_001027681 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-5) (gly-5) mRNA, complete cds. 11/11 None
Y39E4B.12b ENSEMBL cdna:known chromosome:CEL140:III:13186908:13204404:1 gene:Y39E4B.12 11/11 A 
Y39E4B.12a.2 ENSEMBL cdna:known chromosome:CEL140:III:13186908:13204456:1 gene:Y39E4B.12 11/11 A 
Y39E4B.12a.1 ENSEMBL cdna:known chromosome:CEL140:III:13187625:13204456:1 gene:Y39E4B.12 11/11 A 
Y39E4B.12c ENSEMBL cdna:known chromosome:CEL140:III:13187632:13204410:1 gene:Y39E4B.12 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13186901-13204400(+) 96.83 100.0
Public Domain and Genome References
Ensembl Y39E4B.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42368 Hypothetical protein Y39E4B.12b [Caenorhabditis elegans] ref|NP_001022851.1| GLYcosylation related family member (gly-5) [Caenorhabditis elegans] 0.0
blast AAC13671 GLY5a; ppGaNTase [Caenorhabditis elegans] 0.0
blast CAB54435 Hypothetical protein Y39E4B.12a [Caenorhabditis elegans] ref|NP_001022850.1| GLYcosylation related family member (gly-5) [Caenorhabditis elegans] sp|Q95ZJ1|GALT5_CAEEL Polypeptide N-acetylgalactosaminyltransferase 5 (Protein-UDP acetylgalactosaminyltransferase 5) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 5) (pp-GaNTase 5) 0.0
blast AAC13672 GLY5b; ppGaNTase [Caenorhabditis elegans] 0.0
blast CAC42369 Hypothetical protein Y39E4B.12c [Caenorhabditis elegans] ref|NP_001022852.1| GLYcosylation related family member (gly-5) [Caenorhabditis elegans] 0.0
blast AAC13673 GLY5c; ppGaNTase [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 2.0E-9
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.6E-8
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.8E-7
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 9.1E-40
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 3.5E-9
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.6E-8
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.8E-7
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 6.6E-11
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.6E-8
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 1.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022851.1 1 12-31
NP_001022850.1 1 12-31
NP_001022852.1 1 12-31
Y39E4B.12b 1 12-31
Y39E4B.12a.2 1 12-31
Y39E4B.12a.1 1 12-31
Y39E4B.12c 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:175627_S_AT
aattcctgcatttctttcgattttcactttttccatgtaattccacttttttttctgggt
atatgctcttgaactgttttatcactttttctccccgcgcgcatccacacatccaatcct
tgtgatatttatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCCTGCATTTCTTTCGATTTTC 52 179 2239 Antisense
CCTGCATTTCTTTCGATTTTCACTT 343 267 2243 Antisense
TTCTTTCGATTTTCACTTTTTCCAT 484 689 2250 Antisense
TTCGATTTTCACTTTTTCCATGTAA 572 695 2254 Antisense
TTTCACTTTTTCCATGTAATTCCAC 399 673 2260 Antisense
CACTTTTTCCATGTAATTCCACTTT 514 177 2263 Antisense
CACTTTTTTTTCTGGGTATATGCTC 211 195 2282 Antisense
GGGTATATGCTCTTGAACTGTTTTA 155 495 2295 Antisense
GCTCTTGAACTGTTTTATCACTTTT 258 301 2303 Antisense
CATCCACACATCCAATCCTTGTGAT 256 211 2340 Antisense
ACATCCAATCCTTGTGATATTTATG 74 107 2347 Antisense
Sequence Source GenBank