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[175626_at] 1r20 protein (human)

Description g6959857 /REP_DB=GenBank Identifier /GB=AF220159.1 /PROTEIN_GB=AAF33236.1 /CHR=3 /FEA=Mapped Transcript /DEF=RGS-1
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 60      6grp_total > 16      4grp_total > 31      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 455
1 2 3 4 range
A 533.3
(3)
P 		235.3
(-3)
P 		252.1
(-2.7)
P 		416.1
(0.6)
P 		298
B 609.7
(3)
P 		276.1
(-1.4)
P 		155
(-3)
P 		459.9
(1)
P 		455
C 505.4
(3)
P 		301.2
(-2.7)
P 		289.3
(-3)
P 		345.6
(-1.4)
P 		216
avr 549.5
(3) 		270.9
(-2.3) 		232.1
(-3) 		407.2
(0.3) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 638.6
(3)
P 		368.5
(-1.6)
P 		355.8
(-1.8)
P 		308
(-2.6)
P 		306.5
(-2.6)
P 		285.5
(-3)
P 		353
B 465.2
(3)
P 		441
(2.3)
P 		261.6
(-3)
P 		328.9
(-1)
P 		272
(-2.7)
P 		315.5
(-1.4)
P 		204
C 404.2
(1.8)
P 		465.8
(3)
P 		270.7
(-0.7)
P 		325.5
(0.4)
P 		147.8
(-3)
P 		213.9
(-1.8)
P 		318
avr 502.7
(3) 		425.1
(1.2) 		296
(-1.8) 		320.8
(-1.2) 		242.1
(-3) 		271.6
(-2.3) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 194.2
(3)
P 		51.1
(-3)
P 		65.9
(-2.4)
P 		60.9
(-2.6)
P 		143
B 194.4
(3)
P 		68.2
(-1.8)
P 		35.9
(-3)
P 		98
(-0.6)
P 		159
C 167.3
(3)
P 		86.6
(-1.4)
P 		100.8
(-0.7)
P 		58.3
(-3)
P 		109
avr 185.3
(3) 		68.6
(-2.9) 		67.5
(-3) 		72.4
(-2.8) 		118

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 117.7
(1.7)
P 		131.1
(3)
P 		77.5
(-2.2)
P 		78.1
(-2.2)
P 		92.5
(-0.8)
P 		69.5
(-3)
P 		62
B 161.9
(3)
P 		146.8
(2.1)
P 		63.5
(-3)
P 		87.1
(-1.6)
P 		110.5
(-0.1)
P 		117.6
(0.3)
P 		98
C 149.8
(3)
P 		142.1
(2.5)
P 		68.9
(-1.8)
P 		65.5
(-2)
P 		47.8
(-3)
P 		71.6
(-1.6)
P 		102
avr 143.1
(3) 		140
(2.7) 		70
(-3) 		76.9
(-2.4) 		83.6
(-1.9) 		86.2
(-1.7) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175626_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19771
Sequence Type Exemplar sequence
Representative Public ID 6959857 NCBI
Target Description g6959857 /REP_DB=GenBank Identifier /GB=AF220159.1 /PROTEIN_GB=AAF33236.1 /CHR=3 /FEA=Mapped Transcript /DEF=RGS-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066820(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066820 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-1) (rgs-1) mRNA, complete cds. 11/11 A 
C05B5.7 ENSEMBL cdna:known chromosome:CEL140:III:10014082:10016448:-1 gene:C05B5.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026750 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10014077-10016445(-) 99.69 99.69
Public Domain and Genome References
Gene Title 1r20 protein (human)
Gene Symbol rgs-1
Ensembl C05B5.7
Entrez Gene 176415 Entrez gene
SwissProt P34295 EMBL-EBI
WormBase CE27794 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.11323.1.S1_S_AT similar to regulator of G-protein signalling 20 isoform b cfa
CHICKEN:GGA.352.1.S1_AT regulator of G-protein signalling 20 gga
HG-U133A:210138_AT regulator of G-protein signalling 20 hs
HG-U133_PLUS_2:210138_AT regulator of G-protein signalling 20 hs
HG-FOCUS:210138_AT regulator of G-protein signalling 20 hs
HG-U133A_2:210138_AT regulator of G-protein signalling 20 hs
HU35KSUBC:RC_N49767_AT regulator of G-protein signalling 20 hs
HU35KSUBD:RC_AA450087_AT regulator of G-protein signalling 20 hs
U133_X3P:G3523159_3P_AT regulator of G-protein signalling 20 hs
U133_X3P:HS2.402165.1.S1_3P_S_AT regulator of G-protein signalling 20 hs
HG-U133_PLUS_2:1569303_S_AT regulator of G-protein signalling 20 hs
HG-U95AV2:41086_AT regulator of G-protein signalling 20 hs
HG-U95C:63193_AT Regulator of G-protein signalling 20 hs
MOE430A:1421493_A_AT regulator of G-protein signaling 20 mm
MOUSE430_2:1421493_A_AT regulator of G-protein signaling 20 mm
MOUSE430A_2:1421493_A_AT regulator of G-protein signaling 20 mm
MOUSE430_2:1446199_AT regulator of G-protein signaling 20 mm
MOE430B:1446199_AT regulator of G-protein signaling 20 mm
MOE430B:1443694_AT regulator of G-protein signaling 20 mm
MOUSE430_2:1443694_AT regulator of G-protein signaling 20 mm
RAE230B:1396547_AT Similar to regulator of G-protein signaling Z1 rn
RAT230_2:1396547_AT Similar to regulator of G-protein signaling Z1 rn
RAE230B:1396870_AT Similar to regulator of G-protein signaling Z1 rn
RAT230_2:1396870_AT Similar to regulator of G-protein signaling Z1 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA83595 Hypothetical protein C05B5.7 [Caenorhabditis elegans] ref|NP_499221.1| Regulator of G protein Signaling family member (rgs-1) [Caenorhabditis elegans] gb|AAF33236.1| RGS-1 [Caenorhabditis elegans] sp|P34295|RGS1_CAEEL Regulator of G protein signaling rgs-1 1.0E-103
blast G88571 protein C05B5.7 [imported] - Caenorhabditis elegans 1.0E-103
blast S43576 C05B5.7 protein (clone C05B5) - Caenorhabditis elegans 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR000342 EMBL-EBI Regulator of G protein 1.0E-55
Sequence
Target Sequence 
>C. ELEGANS:175626_AT
gatttctaccgccgtaatagcagttcaatattttatgcaaaaatttatccaaatcgccag
aacttcttcctccaactcattcaattcaacttgtgataaactaactttgatctccgatgc
tgcttattgcatttgccaatcttagatctattttgatcagtgtcattcattttatgattt
gcaatttcagagactttttctcttatcctactatattctcaatcatcatctgaacctttg
tgatattactttcaagacattctattttttcttctttaattctctgttcaaatcaacacc
caccacatccctttcacccccgtgaccattcttttgtgaaattgtcttgaaatctagatg
tcggctagagaaggcatctgttatttgtactttatcttccagccactcaacatttcttcc
gatcaaacctatgtttaaattgttccccccatcattgtctcttctctcctttcactcgaa
tatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCTACCGCCGTAATAGCAGTT 233 425 741 Antisense
TATCCAAATCGCCAGAACTTCTTCC 112 659 786 Antisense
ATAAACTAACTTTGATCTCCGATGC 263 25 836 Antisense
GATGCTGCTTATTGCATTTGCCAAT 139 415 856 Antisense
ACTTTTTCTCTTATCCTACTATATT 406 101 933 Antisense
TTCTCTGTTCAAATCAACACCCACC 272 693 1020 Antisense
CCCCGTGACCATTCTTTTGTGAAAT 183 261 1058 Antisense
TATTTGTACTTTATCTTCCAGCCAC 212 661 1122 Antisense
TTTCTTCCGATCAAACCTATGTTTA 564 671 1153 Antisense
TATGTTTAAATTGTTCCCCCCATCA 215 213 1170 Antisense
TTCTCTCCTTTCACTCGAATATATT 617 691 1202 Antisense
Sequence Source GenBank