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[175625_at]

Description g6635138 /REP_DB=GenBank Identifier /GB=AB025253.1 /PROTEIN_GB=BAA88577.1 /CHR=2 /FEA=Mapped Transcript /DEF=DAZ-1
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 40      6grp_highest_sub > Da      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 414
1 2 3 4 range
A 164.5
(-3)
P 		381.1
(0.3)
P 		561
(3)
P 		404.1
(0.6)
P 		397
B 177.8
(-3)
P 		348.4
(0.4)
P 		478.4
(3)
P 		376.8
(1)
P 		301
C 146.9
(-3)
P 		348.9
(0.2)
P 		525.9
(3)
P 		380.6
(0.7)
P 		379
avr 163.1
(-3) 		359.5
(0.3) 		521.8
(3) 		387.2
(0.7) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1798
1 2 3 4 5 6 range
A 198.6
(-2.9)
P 		167.2
(-3)
P 		351.6
(-2.4)
P 		370.5
(-2.3)
P 		1250.6
(0.7)
P 		1903.6
(3)
P 		1736
B 127.8
(-3)
P 		155.7
(-2.9)
P 		286.4
(-2.4)
P 		516.4
(-1.6)
P 		973.8
(-0)
P 		1823.1
(3)
P 		1695
C 135
(-3)
P 		181.2
(-2.8)
P 		467.5
(-1.9)
P 		422.5
(-2)
P 		1144.4
(0.4)
P 		1926.2
(3)
P 		1791
avr 153.8
(-3) 		168
(-3) 		368.5
(-2.3) 		436.5
(-2) 		1122.9
(0.4) 		1884.3
(3) 		1731
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 59.9
(-3)
P 		82.7
(-1.4)
P 		146.7
(3)
P 		59.2
(-3)
P 		88
B 56.7
(-3)
P 		86.1
(0.3)
P 		110.8
(3)
P 		80.3
(-0.4)
P 		54
C 48.6
(-3)
P 		100.3
(-0.7)
P 		183.3
(3)
P 		64.2
(-2.3)
P 		135
avr 55.1
(-3) 		89.7
(-0.7) 		146.9
(3) 		67.9
(-2.2) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 643
1 2 3 4 5 6 range
A 36.6
(-3)
P 		59.5
(-2.7)
P 		76.6
(-2.4)
P 		94
(-2.2)
P 		377.4
(1.8)
P 		463.5
(3)
P 		427
B 44.5
(-3)
P 		51.8
(-2.9)
P 		69.6
(-2.8)
P 		136.8
(-2.1)
P 		395.6
(0.3)
P 		679.8
(3)
P 		635
C 50.1
(-3)
P 		55.3
(-2.9)
P 		119
(-2.3)
P 		85
(-2.6)
P 		370.3
(0.2)
P 		644.8
(3)
P 		595
avr 43.7
(-3) 		55.5
(-2.9) 		88.4
(-2.5) 		105.3
(-2.3) 		381.1
(0.7) 		596
(3) 		552
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175625_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19743
Sequence Type Exemplar sequence
Representative Public ID 6635138 NCBI
Target Description g6635138 /REP_DB=GenBank Identifier /GB=AB025253.1 /PROTEIN_GB=BAA88577.1 /CHR=2 /FEA=Mapped Transcript /DEF=DAZ-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062635(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062635 NCBI Caenorhabditis elegans human DAZ (Deleted in Azoospermia) homolog family member (daz-1) (daz-1) mRNA, complete cds. 11/11 A 
F56D1.7 ENSEMBL cdna:known chromosome:CEL140:II:5456275:5458575:1 gene:F56D1.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5456272-5458573(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol daz-1
Ensembl F56D1.7
Entrez Gene 173931 Entrez gene
SwissProt Q20870 EMBL-EBI
WormBase CE27175 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68389 Human daz (deleted in azoospermia) homolog protein 1 [Caenorhabditis elegans] ref|NP_495036.3| human DAZ (Deleted in Azoospermia) homolog family member (daz-1) [Caenorhabditis elegans] 0.0
blast Q20870 DAZ protein 1 dbj|BAA88577.1| DAZ-1 [Caenorhabditis elegans] 0.0
blast T30110 hypothetical protein F56D1.5 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 6.4E-18
Sequence
Target Sequence 
>C. ELEGANS:175625_AT
gtagttttctattccattgctctggtgcctaccaaataagaattaaaacacgtattttgt
atcctatacgcaactgtatatttgattcaaatactagaattagctagtttctttctcttt
ttcctatccaaattatcttccttacgaatattgttccattctataatgtgcttctgaagc
catcgatcttttcatatcttctagtaagattgaatttagatcccacgttccccattccca
tagtattcaaatgtttttgtatgcccccaatttagaataaaatgaaatcacaataatgac
accagtagcccctctctcgcattacatggtaattttgaatcacccaaattgtccacttta
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGTTTTCTATTCCATTGCTCTGG 222 457 1583 Antisense
CCATTGCTCTGGTGCCTACCAAATA 696 269 1596 Antisense
GAATTAGCTAGTTTCTTTCTCTTTT 172 325 1679 Antisense
TCCTATCCAAATTATCTTCCTTACG 683 591 1704 Antisense
GAAGCCATCGATCTTTTCATATCTT 458 345 1758 Antisense
GATTGAATTTAGATCCCACGTTCCC 641 423 1790 Antisense
TTCCCCATTCCCATAGTATTCAAAT 435 697 1810 Antisense
CAAATGTTTTTGTATGCCCCCAATT 110 189 1830 Antisense
ACAATAATGACACCAGTAGCCCCTC 136 115 1872 Antisense
CCCTCTCTCGCATTACATGGTAATT 397 259 1892 Antisense
GAATCACCCAAATTGTCCACTTTAA 443 327 1919 Antisense
Sequence Source GenBank