[Home] | [Total List]

[175620_at]

Description g675506 /REP_DB=GenBank Identifier /GB=L26987.1 /PROTEIN_GB=AAA62312.1 /CHR=3 /FEA=Mapped Transcript
Cluster 6grp_total > 88      4grp_total > 11      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 63.1
(-2.9)
A 		62.7
(-3)
A 		69.2
(-2.1)
A 		104.5
(3)
A 		42
B 59.6
(0.9)
A 		35.2
(-1.1)
A 		12.9
(-3)
A 		84.8
(3)
A 		72
C 57.2
(-3)
A 		81.5
(0.9)
A 		57.5
(-3)
A 		95
(3)
A 		38
avr 60
(-1.3) 		59.8
(-1.3) 		46.5
(-3) 		94.8
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 52.8
(-3)
A 		76.7
(-2.5)
A 		54.5
(-3)
A 		114.5
(-1.7)
A 		210.6
(0.3)
A 		339
(3)
P 		286
B 55.1
(-1.9)
A 		48.5
(-2.1)
A 		9.4
(-3)
A 		59.5
(-1.8)
A 		131.4
(-0.2)
A 		267
(3)
P 		258
C 28.2
(-3)
A 		57
(-2)
A 		81.3
(-1.1)
A 		69.8
(-1.5)
A 		144.5
(1.2)
A 		194.9
(3)
A 		167
avr 45.4
(-3) 		60.7
(-2.6) 		48.4
(-2.9) 		81.3
(-2) 		162.2
(0.2) 		267
(3) 		222
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 23
(3)
A 		13.6
(-3)
A 		18.1
(-0.1)
A 		15.3
(-1.9)
A 		9
B 19
(3)
A 		8.7
(-0.9)
A 		3
(-3)
A 		18.1
(2.7)
A 		16
C 18.9
(-0.6)
A 		23.4
(3)
A 		20
(0.2)
A 		16
(-3)
A 		7
avr 20.3
(3) 		15.2
(-1.6) 		13.7
(-3) 		16.5
(-0.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 9.7
(-3)
A 		27.3
(-1.5)
A 		11.9
(-2.8)
A 		29
(-1.4)
A 		63.6
(1.4)
A 		82.5
(3)
P 		73
B 19.2
(-2)
A 		16.2
(-2.1)
A 		2.3
(-3)
A 		15.7
(-2.2)
A 		53.4
(0.2)
A 		99.5
(3)
P 		97
C 10.4
(-3)
A 		17.4
(-2.2)
A 		20.7
(-1.9)
A 		14
(-2.6)
A 		46.8
(1)
A 		65.2
(3)
A 		55
avr 13.1
(-2.9) 		20.3
(-2.3) 		11.6
(-3) 		19.6
(-2.3) 		54.6
(0.6) 		82.4
(3) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175620_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19832
Sequence Type Exemplar sequence
Representative Public ID 675506 NCBI
Target Description g675506 /REP_DB=GenBank Identifier /GB=L26987.1 /PROTEIN_GB=AAA62312.1 /CHR=3 /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027459(11), L26987(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027459 NCBI Caenorhabditis elegans abnormal embryonic PARtitioning of cytoplasm family member (par-2) (par-2) mRNA, complete cds. 11/11 None
L26987 NCBI Caenorhabditis elegans par-2 mRNA, complete cds. 10/11 None
F58B6.3b ENSEMBL cdna:known chromosome:CEL140:III:1081392:1095035:1 gene:F58B6.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003675 5/11 Cross Hyb Matching Probes None
GENEFINDER00000003680 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175275 2 1 NM_001027459 172125_x_at (11), 175620_at (11)
NM_064931 176609_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1081387-1095067(+) 96.09 100.0
Public Domain and Genome References
Ensembl F58B6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73890 Abnormal embryonic partitioning of cytoplasm protein 2, isoform b [Caenorhabditis elegans] ref|NP_001022630.1| abnormal embryonic PARtitioning of cytoplasm family member (par-2) [Caenorhabditis elegans] 0.0
blast AAA62312 par-2 0.0
blast T33809 par-2 protein - Caenorhabditis elegans 0.0
blast T33809 par-2 protein - Caenorhabditis elegans 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.3E-8
Sequence
Target Sequence 
>C. ELEGANS:175620_AT
gaaatgcttatgaacgtcccatcggaggcttcaggccaaacacgtgtactttctgcaaat
gcactcgaaactacgatgaaaacgataccgattcgtgatgtgtgtgctaatcaactggat
aaaggagtcgtggaagagatgctcctctcaatttgtgaacgtgtaacgaccgcccgtaat
cctcaaactcccacgtcatcacccattgccacgtcatcatcaccgtcatagaggattacg
gtagcactacagtaccccgcagccccgcccacgcaaagaaaatgtgtttaaatattctat
tctatttctatttttatttatgatatttatcgatttttttcttcctatttatatattttt
ttaattgatttttcgcgcctcccccacgaattttaagcattttttttgtactacggtagt
tttagccaccacgaccccatttttcacgttattttttctgtctgtgtgtgtgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGCTTATGAACGTCCCATCGG 368 361 1676 Antisense
TCCCATCGGAGGCTTCAGGCCAAAC 262 589 1692 Antisense
GGCCAAACACGTGTACTTTCTGCAA 227 543 1709 Antisense
TCTGCAAATGCACTCGAAACTACGA 109 609 1727 Antisense
GATACCGATTCGTGATGTGTGTGCT 171 425 1759 Antisense
GTCGTGGAAGAGATGCTCCTCTCAA 395 473 1802 Antisense
TTACGGTAGCACTACAGTACCCCGC 132 681 1911 Antisense
GCCCCGCCCACGCAAAGAAAATGTG 159 285 1937 Antisense
GATTTTTTTCTTCCTATTTATATAT 458 429 2007 Antisense
TACTACGGTAGTTTTAGCCACCACG 605 541 2084 Antisense
TATTTTTTCTGTCTGTGTGTGTGCG 539 661 2125 Antisense
Sequence Source GenBank